RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB1404" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB1404 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28170088 28170088 PRJEB1404_S_NODE_2446_length_206_cov_0.935673_g2426_i0 PRJEB1404 2446 206 0.935673 1.92748638 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 98.6 5e-22   NR XP_012653068.1 312017 g2426 i0 90.4 0.757281553398058 52 5 75.7 0 195 40 431 482 XP_012653068.1 AAA family ATPase [Tetrahymena thermophila SB210] diamond 156 98.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
29117488 29117488 PRJEB1404_S_NODE_4749_length_150_cov_3.478261_g4729_i0 PRJEB1404 4749 150 3.478261 5.2173915 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 41.6 0.0265   NR XP_001027976.1 312017 g4729 i0 90.5 0.42 21 2 42 0 2 64 371 391 XP_001027976.1 60S ribosomal protein L3, putative [Tetrahymena thermophila SB210] diamond 63 41.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;