RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB1404" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB1404 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29085883 29085883 PRJEB1404_S_NODE_8_length_1003_cov_430.389463_g0_i6 PRJEB1404 8 1003 430.389463 4316.80631389 uncultured Schaedlerella sp. 2676055 Bacteria Bacteria 49.3 0.0065   NR WP_331495230.1 2676055 g0 i6 82.1 0.155533399800598 28 5 8.4 0 25 108 1 28 WP_331495230.1 SdpI family protein, partial [uncultured Schaedlerella sp.] diamond 156 49.3 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Schaedlerella uncultured Schaedlerella sp.
29559216 29559216 PRJEB1404_S_NODE_2350_length_209_cov_264.919540_g2330_i0 PRJEB1404 2350 209 264.91954 553.6818386 Enterocloster clostridioformis 1531 Bacteria Bacteria 42 0.0231   NR WP_289704086.1 1531 g2330 i0 90 0.287081339712919 20 2 28.7 0 1 60 1 20 WP_289704086.1 IS66 family transposase, partial [Enterocloster clostridioformis] diamond 60 42 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster clostridioformis
32467732 32467732 PRJEB1404_S_NODE_1659_length_239_cov_277.343137_g1639_i0 PRJEB1404 1659 239 277.343137 662.85009743 Enterocloster clostridioformis 1531 Bacteria Bacteria 42 0.0329   NR WP_289704086.1 1531 g1639 i0 90 0.251046025104602 20 2 25.1 0 239 180 1 20 WP_289704086.1 IS66 family transposase, partial [Enterocloster clostridioformis] diamond 60 42 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster clostridioformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;