RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJEB1404" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJEB1404 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28043790 28043790 PRJEB1404_S_NODE_2145_length_218_cov_1.748634_g2125_i0 PRJEB1404 2145 218 1.748634 3.81202212 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 79.7 4.84e-16   NR KAF0724285.1 100861 g2125 i0 70.7 0.798165137614679 58 17 79.8 0 45 218 14 71 KAF0724285.1 hypothetical protein Ae201684_016950 [Aphanomyces euteiches] diamond 174 79.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
28170088 28170088 PRJEB1404_S_NODE_2446_length_206_cov_0.935673_g2426_i0 PRJEB1404 2446 206 0.935673 1.92748638 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 98.6 5e-22   NR XP_012653068.1 312017 g2426 i0 90.4 0.757281553398058 52 5 75.7 0 195 40 431 482 XP_012653068.1 AAA family ATPase [Tetrahymena thermophila SB210] diamond 156 98.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
29117488 29117488 PRJEB1404_S_NODE_4749_length_150_cov_3.478261_g4729_i0 PRJEB1404 4749 150 3.478261 5.2173915 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 41.6 0.0265   NR XP_001027976.1 312017 g4729 i0 90.5 0.42 21 2 42 0 2 64 371 391 XP_001027976.1 60S ribosomal protein L3, putative [Tetrahymena thermophila SB210] diamond 63 41.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
29338389 29338389 PRJEB1404_S_NODE_3669_length_169_cov_1.738806_g3649_i0 PRJEB1404 3669 169 1.738806 2.93858214 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 85.5 3.11e-18   NR KAG9410527.1 112091 g3649 i0 93.2 1.56213017751479 44 3 78.1 0 2 133 247 290 KAG9410527.1 hypothetical protein AC1031_018567 [Aphanomyces cochlioides] diamond 264 85.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
29496169 29496169 PRJEB1404_S_NODE_3710_length_168_cov_1.804511_g3690_i0 PRJEB1404 3710 168 1.804511 3.03157848 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 58.2 1.36e-8   NR KAG9399323.1 112091 g3690 i0 69.6 0.821428571428571 46 12 78.6 1 168 37 125 170 KAG9399323.1 hypothetical protein AC1031_011670 [Aphanomyces cochlioides] diamond 138 58.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
32751348 32751348 PRJEB1404_S_NODE_3520_length_172_cov_1.131387_g3500_i0 PRJEB1404 3520 172 1.131387 1.94598564 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.00354   NR KAF0740007.1 100861 g3500 i0 76 0.872093023255814 25 5 43.6 1 1 75 73 96 KAF0740007.1 hypothetical protein Ae201684_004452 [Aphanomyces euteiches] diamond 150 42.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;