RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB1404" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJEB1404 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22973067 22973067 PRJEB1404_P_NODE_919_length_332_cov_2.913621_g894_i0 PRJEB1404 919 332 2.913621 9.67322172 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 138 8.32e-38   NR NP_066520.1 5762 g894 i0 95.7 0.632530120481928 70 3 63.3 0 330 121 196 265 NP_066520.1 ribosomal protein L2 [Naegleria gruberi] diamond 210 138 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28485845 28485845 PRJEB1404_P_NODE_3867_length_179_cov_2.554054_g3841_i0 PRJEB1404 3867 179 2.554054 4.57175666 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 106 7.35e-28   NR NP_066524.1 5762 g3841 i0 87.7 1.08938547486034 65 0 95.5 1 172 2 1 65 NP_066524.1 ribosomal protein L14 [Naegleria gruberi] diamond 195 106 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28991323 28991323 PRJEB1404_P_NODE_3668_length_186_cov_1.322581_g3642_i0 PRJEB1404 3668 186 1.322581 2.46000066 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 54.3 1.16e-7   NR XP_044568952.1 5763 g3642 i0 55.3 0.758064516129032 47 20 74.2 1 184 47 46 92 XP_044568952.1 uncharacterized protein FDP41_007416 [Naegleria fowleri] diamond 141 54.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;