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contig_metadata

16 rows where analysis = "diamond" and bioproject = "PRJEB1404"

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tax_kingdom 3

tax_clade 3

tax_superkingdom 2

bioproject 1

  • PRJEB1404 · 16 ✖

analysis 1

  • diamond · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22973067 22973067 PRJEB1404_P_NODE_919_length_332_cov_2.913621_g894_i0 PRJEB1404 919 332 2.913621 9.67322172 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 138 8.32e-38   NR NP_066520.1 5762 g894 i0 95.7 0.632530120481928 70 3 63.3 0 330 121 196 265 NP_066520.1 ribosomal protein L2 [Naegleria gruberi] diamond 210 138 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27412535 27412535 PRJEB1404_P_NODE_4703_length_157_cov_2.492063_g4677_i0 PRJEB1404 4703 157 2.492063 3.91253891 Macrosiphum euphorbiae 13131 Arthropoda Arthropoda 41.2 0.035   NR CAI6376859.1 13131 g4677 i0 40.4 0.993630573248408 52 25 87.9 1 157 20 136 187 CAI6376859.1 unnamed protein product [Macrosiphum euphorbiae] diamond 156 41.2 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hemiptera Aphididae Macrosiphum Macrosiphum euphorbiae
27696822 27696822 PRJEB1404_S_NODE_3364_length_176_cov_1.617021_g3344_i0 PRJEB1404 3364 176 1.617021 2.84595696 bacterium 1869227 Bacteria Bacteria 40.4 0.0267   NR MEI8078213.1 1869227 g3344 i0 43.2 0.75 44 25 75 0 17 148 47 90 MEI8078213.1 ATP-binding cassette domain-containing protein [bacterium] diamond 132 40.4 1 Bacteria               bacterium
28043790 28043790 PRJEB1404_S_NODE_2145_length_218_cov_1.748634_g2125_i0 PRJEB1404 2145 218 1.748634 3.81202212 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 79.7 4.84e-16   NR KAF0724285.1 100861 g2125 i0 70.7 0.798165137614679 58 17 79.8 0 45 218 14 71 KAF0724285.1 hypothetical protein Ae201684_016950 [Aphanomyces euteiches] diamond 174 79.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
28170088 28170088 PRJEB1404_S_NODE_2446_length_206_cov_0.935673_g2426_i0 PRJEB1404 2446 206 0.935673 1.92748638 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 98.6 5e-22   NR XP_012653068.1 312017 g2426 i0 90.4 0.757281553398058 52 5 75.7 0 195 40 431 482 XP_012653068.1 AAA family ATPase [Tetrahymena thermophila SB210] diamond 156 98.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
28485845 28485845 PRJEB1404_P_NODE_3867_length_179_cov_2.554054_g3841_i0 PRJEB1404 3867 179 2.554054 4.57175666 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 106 7.35e-28   NR NP_066524.1 5762 g3841 i0 87.7 1.08938547486034 65 0 95.5 1 172 2 1 65 NP_066524.1 ribosomal protein L14 [Naegleria gruberi] diamond 195 106 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28833092 28833092 PRJEB1404_P_NODE_4588_length_160_cov_1.302326_g4562_i0 PRJEB1404 4588 160 1.302326 2.0837216 Marmoricola endophyticus 2040280 Bacteria Bacteria 43.9 0.00457   NR WP_188779571.1 2040280 g4562 i0 43.5 0.8625 46 26 86.3 0 22 159 99 144 WP_188779571.1 hypothetical protein [Marmoricola endophyticus] diamond 138 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Marmoricola Marmoricola endophyticus
28991323 28991323 PRJEB1404_P_NODE_3668_length_186_cov_1.322581_g3642_i0 PRJEB1404 3668 186 1.322581 2.46000066 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 54.3 1.16e-7   NR XP_044568952.1 5763 g3642 i0 55.3 0.758064516129032 47 20 74.2 1 184 47 46 92 XP_044568952.1 uncharacterized protein FDP41_007416 [Naegleria fowleri] diamond 141 54.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
29085883 29085883 PRJEB1404_S_NODE_8_length_1003_cov_430.389463_g0_i6 PRJEB1404 8 1003 430.389463 4316.80631389 uncultured Schaedlerella sp. 2676055 Bacteria Bacteria 49.3 0.0065   NR WP_331495230.1 2676055 g0 i6 82.1 0.155533399800598 28 5 8.4 0 25 108 1 28 WP_331495230.1 SdpI family protein, partial [uncultured Schaedlerella sp.] diamond 156 49.3 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Schaedlerella uncultured Schaedlerella sp.
29117488 29117488 PRJEB1404_S_NODE_4749_length_150_cov_3.478261_g4729_i0 PRJEB1404 4749 150 3.478261 5.2173915 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 41.6 0.0265   NR XP_001027976.1 312017 g4729 i0 90.5 0.42 21 2 42 0 2 64 371 391 XP_001027976.1 60S ribosomal protein L3, putative [Tetrahymena thermophila SB210] diamond 63 41.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
29338389 29338389 PRJEB1404_S_NODE_3669_length_169_cov_1.738806_g3649_i0 PRJEB1404 3669 169 1.738806 2.93858214 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 85.5 3.11e-18   NR KAG9410527.1 112091 g3649 i0 93.2 1.56213017751479 44 3 78.1 0 2 133 247 290 KAG9410527.1 hypothetical protein AC1031_018567 [Aphanomyces cochlioides] diamond 264 85.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
29496169 29496169 PRJEB1404_S_NODE_3710_length_168_cov_1.804511_g3690_i0 PRJEB1404 3710 168 1.804511 3.03157848 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 58.2 1.36e-8   NR KAG9399323.1 112091 g3690 i0 69.6 0.821428571428571 46 12 78.6 1 168 37 125 170 KAG9399323.1 hypothetical protein AC1031_011670 [Aphanomyces cochlioides] diamond 138 58.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
29559216 29559216 PRJEB1404_S_NODE_2350_length_209_cov_264.919540_g2330_i0 PRJEB1404 2350 209 264.91954 553.6818386 Enterocloster clostridioformis 1531 Bacteria Bacteria 42 0.0231   NR WP_289704086.1 1531 g2330 i0 90 0.287081339712919 20 2 28.7 0 1 60 1 20 WP_289704086.1 IS66 family transposase, partial [Enterocloster clostridioformis] diamond 60 42 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster clostridioformis
30822944 30822944 PRJEB1404_P_NODE_2834_length_211_cov_12.366667_g2808_i0 PRJEB1404 2834 211 12.366667 26.09366737 Klebsiella pneumoniae 573 Bacteria Bacteria 92.8 2.71e-22   NR WP_416501348.1 573 g2808 i0 100 1.22274881516588 43 0 61.1 0 2 130 85 127 WP_416501348.1 hypothetical protein, partial [Klebsiella pneumoniae] diamond 258 92.8 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
32467732 32467732 PRJEB1404_S_NODE_1659_length_239_cov_277.343137_g1639_i0 PRJEB1404 1659 239 277.343137 662.85009743 Enterocloster clostridioformis 1531 Bacteria Bacteria 42 0.0329   NR WP_289704086.1 1531 g1639 i0 90 0.251046025104602 20 2 25.1 0 239 180 1 20 WP_289704086.1 IS66 family transposase, partial [Enterocloster clostridioformis] diamond 60 42 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster clostridioformis
32751348 32751348 PRJEB1404_S_NODE_3520_length_172_cov_1.131387_g3500_i0 PRJEB1404 3520 172 1.131387 1.94598564 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.00354   NR KAF0740007.1 100861 g3500 i0 76 0.872093023255814 25 5 43.6 1 1 75 73 96 KAF0740007.1 hypothetical protein Ae201684_004452 [Aphanomyces euteiches] diamond 150 42.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;