RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB12982" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB12982 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27665091 27665091 PRJEB12982_P_NODE_18864_length_164_cov_0.886957_g18701_i0 PRJEB12982 18864 164 0.886957 1.45460948 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 77.4 7.58e-15   NR XP_004353652.1 1257118 g18701 i0 74.5 0.932926829268293 51 13 93.3 0 6 158 327 377 XP_004353652.1 transcriptional regulator, Sir2 family protein [Acanthamoeba castellanii str. Neff] diamond 153 77.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29938376 29938376 PRJEB12982_P_NODE_21071_length_161_cov_0.910714_g20908_i0 PRJEB12982 21071 161 0.910714 1.46624954 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.4 2.85e-4   NR XP_004341550.1 1257118 g20908 i0 62.5 1.2111801242236 32 12 59.6 0 1 96 547 578 XP_004341550.1 methylenetetrahydrofolate reductase [Acanthamoeba castellanii str. Neff] diamond 195 47.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32782633 32782633 PRJEB12982_P_NODE_13360_length_191_cov_1.436620_g13197_i0 PRJEB12982 13360 191 1.43662 2.7439442 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.1 2.31e-4   NR XP_004353486.1 1257118 g13197 i0 47.2 0.832460732984293 53 27 83.2 1 159 1 99 150 XP_004353486.1 amine oxidase, flavincontaining superfamily protein [Acanthamoeba castellanii str. Neff] diamond 159 48.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32845769 32845769 PRJEB12982_P_NODE_17100_length_167_cov_0.864407_g16937_i0 PRJEB12982 17100 167 0.864407 1.44355969 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.9 6.68e-19   NR XP_004348701.1 1257118 g16937 i0 67.3 2.96407185628743 55 18 98.8 0 3 167 131 185 XP_004348701.1 Ras family protein [Acanthamoeba castellanii str. Neff] diamond 495 85.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;