RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB12982" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJEB12982 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27696821 27696821 PRJEB12982_P_NODE_9524_length_230_cov_0.944751_g9361_i0 PRJEB12982 9524 230 0.944751 2.1729273 Candidatus Raymondbacteria bacterium RifOxyA12_full_5 1817884 Bacteria Bacteria 42.7 0.0321   NR OGJ89351.1 1817884 g9361 i0 36.8 0.743478260869565 57 36 74.3 0 199 29 499 555 OGJ89351.1 MAG: hypothetical protein A2268_08485 [Candidatus Raymondbacteria bacterium RifOxyA12_full_50_37] diamond 171 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Raymondiibacteriota         Candidatus Raymondbacteria bacterium RifOxyA12_full_50_37
29496166 29496166 PRJEB12982_P_NODE_17510_length_166_cov_0.871795_g17347_i0 PRJEB12982 17510 166 0.871795 1.4471797 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 91.7 1.13e-20   NR HEX2228428.1 2838779 g17347 i0 74.5 1.98795180722892 55 14 99.4 0 166 2 50 104 HEX2228428.1 epoxide hydrolase [Candidatus Binatia bacterium] diamond 330 91.7 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
30096118 30096118 PRJEB12982_P_NODE_17892_length_166_cov_0.871795_g17729_i0 PRJEB12982 17892 166 0.871795 1.4471797 Candidatus Coatesbacteria bacterium 2250272 Bacteria Bacteria 58.9 2.5e-8   NR MBN2208665.1 2250272 g17729 i0 48.1 1.91566265060241 54 25 92.2 1 8 160 182 235 MBN2208665.1 molecular chaperone DnaJ [Candidatus Coatesbacteria bacterium] diamond 318 58.9 1 Bacteria Bacteria candidate phyla   Candidatus Coatesiibacteriota         Candidatus Coatesbacteria bacterium
31606924 31606924 PRJEB12982_P_NODE_17056_length_167_cov_0.864407_g16893_i0 PRJEB12982 17056 167 0.864407 1.44355969 Bacteria 2 Bacteria Bacteria 48.5 1.17e-4   NR MBP9817851.1 2053613 g16893 i0 64.1 5.15568862275449 39 14 70.1 0 137 21 111 149 MBP9817851.1 DHH family phosphoesterase [Candidatus Shapirobacteria bacterium] diamond 861 48.5 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;