RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB12366" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB12366 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1294997 1294997 PRJEB12366_P_NODE_4382_length_401_cov_2.013661_g4192_i0 PRJEB12366 4382 401 2.013661 8.07478061 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 192 4.09e-58   NR KAG9404282.1 112091 g4192 i0 77.5 8.9925187032419 120 27 89.8 0 399 40 204 323 KAG9404282.1 Guanine nucleotide-binding protein subunit beta-2-like 1 [Aphanomyces cochlioides] diamond 3606 192 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
28100444 28100444 PRJEB12366_P_NODE_13765_length_194_cov_1.427673_g13575_i0 PRJEB12366 13765 194 1.427673 2.76968562 root 1 Root_unresolved Root_unresolved 87 4.85e-18   NR KAG9409355.1 112091 g13575 i0 71.9 34.6237113402062 64 18 99 0 192 1 1177 1240 KAG9409355.1 Antigen peptide transporter 2 [Aphanomyces cochlioides] diamond 6717 87.8 0.990888382687927 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;