RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB12366" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12366 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27096161 27096161 PRJEB12366_P_NODE_14482_length_188_cov_1.568627_g14292_i0 PRJEB12366 14482 188 1.568627 2.94901876 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 62.8 2.25e-10   NR KAE9551459.1 2598192 g14292 i0 73.2 1.32446808510638 41 11 65.4 0 66 188 40 80 KAE9551459.1 hypothetical protein FO519_005332 [Halicephalobus sp. NKZ332] diamond 249 62.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
27127424 27127424 PRJEB12366_P_NODE_17062_length_168_cov_2.105263_g16872_i0 PRJEB12366 17062 168 2.105263 3.53684184 Trichostrongylus colubriformis 6319 Nematoda Nematoda 67.4 2.67e-11   NR KAK5972438.1 6319 g16872 i0 69.1 5.125 55 17 98.2 0 166 2 1608 1662 KAK5972438.1 MYOsin heavy chain structural protein, partial [Trichostrongylus colubriformis] diamond 861 67.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus colubriformis
31929516 31929516 PRJEB12366_P_NODE_8397_length_269_cov_1.337607_g8207_i0 PRJEB12366 8397 269 1.337607 3.59816283 Enterobius vermicularis 51028 Nematoda Nematoda 133 8.45e-34   NR VDD92819.1 51028 g8207 i0 67.4 0.992565055762082 89 29 99.3 0 267 1 43 131 VDD92819.1 unnamed protein product [Enterobius vermicularis] diamond 267 133 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;