RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB12366" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12366 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24246610 24246610 PRJEB12366_P_NODE_8400_length_269_cov_1.247863_g8210_i0 PRJEB12366 8400 269 1.247863 3.35675147 Haliotis asinina 109174 Mollusca Mollusca 167 4.05e-48   NR XP_067673732.1 109174 g8210 i0 89.9 2.97769516728625 89 9 99.3 0 2 268 137 225 XP_067673732.1 isovaleryl-CoA dehydrogenase, mitochondrial-like isoform X1 [Haliotis asinina] diamond 801 167 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis asinina
31954774 31954774 PRJEB12366_P_NODE_9917_length_241_cov_1.359223_g9727_i0 PRJEB12366 9917 241 1.359223 3.27572743 Metazoa 33208 Mollusca Mollusca 140 1.58e-36   NR XP_052820721.1 6604 g9727 i0 78.8 5.9253112033195 80 17 99.6 0 241 2 53 132 XP_052820721.1 coatomer subunit beta'-like isoform X1 [Mya arenaria] diamond 1428 140 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;