RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB12366" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12366 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29117447 29117447 PRJEB12366_P_NODE_14289_length_190_cov_1.032258_g14099_i0 PRJEB12366 14289 190 1.032258 1.9612902 Sporobolomyces koalae 500713 Fungi Fungi 129 2.3199999999999993e-34   NR GAA5924262.1 500713 g14099 i0 92.1 1.98947368421053 63 5 99.5 0 1 189 207 269 GAA5924262.1 hypothetical protein JCM15063_005585 [Sporobolomyces koalae] diamond 378 129 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces koalae
29243638 29243638 PRJEB12366_P_NODE_309_length_1454_cov_2.707541_g254_i0 PRJEB12366 309 1454 2.707541 39.36764614 Athelia psychrophila 1759441 Fungi Fungi 403 1.8499999999999998e-132   NR KZP29788.1 1759441 g254 i0 46.6 0.934662998624484 453 225 91 8 1453 131 73 520 KZP29788.1 phosphoglycerate mutase-like protein [Athelia psychrophila] diamond 1359 403 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Atheliales Atheliaceae Athelia Athelia psychrophila
29811758 29811758 PRJEB12366_P_NODE_12391_length_208_cov_1.768786_g12201_i0 PRJEB12366 12391 208 1.768786 3.67907488 Trametes maxima 259368 Fungi Fungi 44.3 0.00682   NR KAI0668012.1 259368 g12201 i0 60.9 0.331730769230769 23 9 33.2 0 137 205 282 304 KAI0668012.1 efflux transporter [Trametes maxima] diamond 69 44.3 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Polyporaceae Trametes Trametes maxima

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;