RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB12366" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB12366 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28384709 28384709 PRJEB12366_P_NODE_4466_length_397_cov_1.560773_g4276_i0 PRJEB12366 4466 397 1.560773 6.19626881 Bacillati 1783272 Bacteria Bacteria 117 3.51e-28   NR MBV1709159.1 38403 g4276 i0 48.4 14.3425692695214 124 62 93.7 2 373 2 175 296 MBV1709159.1 Tm-1-like ATP-binding domain-containing protein [Erysipelothrix sp.] diamond 5694 117 1 Bacteria   Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelothrix Erysipelothrix sp.
32587746 32587746 PRJEB12366_P_NODE_5699_length_344_cov_1.553398_g5509_i0 PRJEB12366 5699 344 1.553398 5.34368912 Bacillota 1239 Bacteria Bacteria 55.1 4.66e-6   NR MBQ2442320.1 41978 g5509 i0 45.1 1.70058139534884 51 28 44.5 0 2 154 176 226 MBQ2442320.1 RICIN domain-containing protein [Ruminococcus sp.] diamond 585 55.5 0.992792792792793 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;