RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB12366" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB12366 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28549150 28549150 PRJEB12366_P_NODE_10407_length_233_cov_2.636364_g10217_i0 PRJEB12366 10407 233 2.636364 6.14272812 Parafrankia irregularis 795642 Bacteria Bacteria 41.6 0.0375   NR WP_091286346.1 795642 g10217 i0 33.3 1.00429184549356 78 48 97.9 2 233 6 20 95 WP_091286346.1 hypothetical protein [Parafrankia irregularis] diamond 234 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Parafrankia Parafrankia irregularis
30974693 30974693 PRJEB12366_P_NODE_17894_length_163_cov_1.367188_g17704_i0 PRJEB12366 17894 163 1.367188 2.22851644 Bacteria 2 Bacteria Bacteria 42.4 0.0165   NR MCW2607975.1 1909291 g17704 i0 44.7 1.80368098159509 47 26 86.5 0 10 150 124 170 MCW2607975.1 glycosyl transferase group 1 [Frankiales bacterium] diamond 294 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Frankiales     Frankiales bacterium
31385657 31385657 PRJEB12366_P_NODE_18376_length_160_cov_1.600000_g18186_i0 PRJEB12366 18376 160 1.6 2.56 Actinomycetes 1760 Bacteria Bacteria 89 1.96e-19   NR WP_197461888.1 36807 g18186 i0 77.4 3.975 53 12 99.4 0 1 159 236 288 WP_197461888.1 alpha/beta hydrolase [Microbacterium laevaniformans] diamond 636 89 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium laevaniformans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;