RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJEB12366" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJEB12366 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27728405 27728405 PRJEB12366_P_NODE_19324_length_155_cov_1.333333_g19134_i0 PRJEB12366 19324 155 1.333333 2.06666615 Bacteroidota bacterium 1898104 Bacteria Bacteria 43.5 0.00601   NR MEL6865079.1 1898104 g19134 i0 73.1 0.929032258064516 26 7 50.3 0 153 76 131 156 MEL6865079.1 caspase family protein [Bacteroidota bacterium] diamond 144 43.5 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
27854272 27854272 PRJEB12366_P_NODE_11245_length_222_cov_1.283422_g11055_i0 PRJEB12366 11245 222 1.283422 2.84919684 Bacteroidia bacterium 2044936 Bacteria Bacteria 116 1.45e-28   NR MBP7167010.1 2044936 g11055 i0 78.1 12.8243243243243 73 16 98.6 0 220 2 198 270 MBP7167010.1 aldehyde dehydrogenase [Bacteroidia bacterium] diamond 2847 116 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia       Bacteroidia bacterium
28511067 28511067 PRJEB12366_P_NODE_19847_length_152_cov_2.051282_g19657_i0 PRJEB12366 19847 152 2.051282 3.11794864 Bacteroidota 976 Bacteria Bacteria 96.3 1.27e-21   NR WP_072877095.1 1005926 g19657 i0 88 11.8421052631579 50 6 98.7 0 3 152 292 341 WP_072877095.1 aldehyde dehydrogenase family protein [Flagellimonas taeanensis] diamond 1800 97.1 0.991761071060762 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas taeanensis
29180616 29180616 PRJEB12366_P_NODE_14909_length_185_cov_1.066667_g14719_i0 PRJEB12366 14909 185 1.066667 1.97333395 Capnocytophaga ochracea F 1018 Bacteria Bacteria 81.3 1.71e-17   NR EFS96365.1 873517 g14719 i0 66.7 0.972972972972973 60 20 97.3 0 183 4 21 80 EFS96365.1 hypothetical protein HMPREF1977_2333, partial [Capnocytophaga ochracea F0287] diamond 180 81.3 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga ochracea
30374691 30374691 PRJEB12366_P_NODE_7692_length_284_cov_1.124498_g7502_i0 PRJEB12366 7692 284 1.124498 3.19357432 Bacteroidota 976 Bacteria Bacteria 69.3 5.78e-12   NR WP_380741923.1 1335724 g7502 i0 41.8 4.17253521126761 67 39 70.8 0 281 81 41 107 WP_380741923.1 metallophosphatase domain-containing protein [Salegentibacter chungangensis] diamond 1185 69.7 0.994261119081779 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Salegentibacter Salegentibacter chungangensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;