RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJEB12296" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12296 · 1 ✖

analysis 1

  • diamond · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
33130095 33130095 PRJEB12296_S_NODE_3655_length_237_cov_3.292079_g3623_i0 PRJEB12296 3655 237 3.292079 7.80222723 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 60.8 1.96e-9   NR CAF0775232.1 104777 g3623 i0 53.7 0.683544303797468 54 25 68.4 0 237 76 90 143 CAF0775232.1 unnamed protein product [Brachionus calyciflorus] diamond 162 60.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;