RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB12296" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB12296 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
33095953 33095953 PRJEB12296_S_NODE_12294_length_165_cov_1.846154_g12262_i0 PRJEB12296 12294 165 1.846154 3.0461541 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 55.1 1.97e-7   NR KAG9399323.1 112091 g12262 i0 68.2 0.8 44 12 76.4 1 1 126 127 170 KAG9399323.1 hypothetical protein AC1031_011670 [Aphanomyces cochlioides] diamond 132 55.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
33110081 33110081 PRJEB12296_S_NODE_10670_length_170_cov_3.970370_g10638_i0 PRJEB12296 10670 170 3.97037 6.749629 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 58.5 3.64e-8   NR XP_024573891.1 4781 g10638 i0 65.7 8.04705882352941 35 12 61.8 0 169 65 113 147 XP_024573891.1 60s ribosomal protein l27a [Plasmopara halstedii] diamond 1368 58.9 0.99320882852292 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;