RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB12296" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12296 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26423140 26423140 PRJEB12296_S_NODE_1727_length_309_cov_407.835766_g1695_i0 PRJEB12296 1727 309 407.835766 1260.21251694 Eukaryota 2759 Fungi Fungi 68.6 6.7e-13   NR ORY35885.1 71784 g1695 i0 66 0.970873786407767 50 17 48.5 0 281 132 17 66 ORY35885.1 40S ribosomal protein S30 [Naematelia encephala] diamond 300 68.6 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Naemateliaceae Naematelia Naematelia encephala
33010666 33010666 PRJEB12296_S_NODE_4708_length_216_cov_2.386740_g4676_i0 PRJEB12296 4708 216 2.38674 5.1553584 Puccinia striiformis f. sp. tritici 168172 Fungi Fungi 40.4 0.0355   NR XP_047797933.1 168172 g4676 i0 82.1 0.777777777777778 28 5 38.9 0 12 95 54 81 XP_047797933.1 hypothetical protein Pst134EA_028829 [Puccinia striiformis f. sp. tritici] diamond 168 40.4 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Pucciniaceae Puccinia Puccinia striiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;