RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB12296" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB12296 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32956669 32956669 PRJEB12296_S_NODE_9730_length_174_cov_2.424460_g9698_i0 PRJEB12296 9730 174 2.42446 4.2185604 Bacillariaceae 33852 SAR_Eukaryotes SAR_Eukaryotes 47 4.85e-4   NR VEU38490.1 183589 g9698 i0 64.5 2.13793103448276 31 11 53.4 0 1 93 725 755 VEU38490.1 unnamed protein product [Pseudo-nitzschia multistriata] diamond 372 47.4 0.991561181434599 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
33130099 33130099 PRJEB12296_S_NODE_3927_length_231_cov_1.586735_g3895_i0 PRJEB12296 3927 231 1.586735 3.66535785 Thalassiosira oceanica 159749 SAR_Eukaryotes SAR_Eukaryotes 51.6 1.66e-6   NR EJK58442.1 159749 g3895 i0 70 0.519480519480519 40 12 51.9 0 86 205 24 63 EJK58442.1 hypothetical protein THAOC_21444 [Thalassiosira oceanica] diamond 120 51.6 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;