RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB12296" and tax_phylum = "Ascomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12296 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32939436 32939436 PRJEB12296_S_NODE_3393_length_244_cov_1.880383_g3361_i0 PRJEB12296 3393 244 1.880383 4.58813452 Xylaria 37991 Fungi Fungi 59.3 2.42e-8   NR KAI0547676.1 42375 g3361 i0 58.7 6.86065573770492 46 19 56.6 0 1 138 24 69 KAI0547676.1 60s acidic ribosomal protein-domain-containing protein, partial [Xylaria curta] diamond 1674 59.3 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Xylariales Xylariaceae Xylaria Xylaria curta
33010652 33010652 PRJEB12296_S_NODE_3180_length_250_cov_4.376744_g3148_i0 PRJEB12296 3180 250 4.376744 10.94186 Cercophora scortea 314031 Fungi Fungi 43.9 0.00572   NR KAK3335352.1 314031 g3148 i0 38.3 0.564 47 29 56.4 0 68 208 81 127 KAK3335352.1 hypothetical protein B0T19DRAFT_5808 [Cercophora scortea] diamond 141 43.9 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Sordariales Lasiosphaeriaceae Cercophora Cercophora scortea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;