RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB12296" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB12296 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32976654 32976654 PRJEB12296_S_NODE_3955_length_230_cov_4.246154_g3923_i0 PRJEB12296 3955 230 4.246154 9.7661542 Mycobacterium asiaticum 1790 Bacteria Bacteria 65.1 1.39e-10   NR WP_172831408.1 1790 g3923 i0 55 2.34782608695652 60 27 78.3 0 229 50 13 72 WP_172831408.1 acetyltransferase [Mycobacterium asiaticum] diamond 540 65.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium asiaticum
32990901 32990901 PRJEB12296_S_NODE_8803_length_178_cov_57.125874_g8771_i0 PRJEB12296 8803 178 57.125874 101.68405572 Bacteria 2 Bacteria Bacteria 89.4 1.38e-19   NR WP_334666726.1 66883 g8771 i0 95.8 13.752808988764 48 2 80.9 0 146 3 186 233 WP_334666726.1 Hsp70 family protein, partial [Streptomyces cyaneofuscatus] diamond 2448 89.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cyaneofuscatus
33112968 33112968 PRJEB12296_S_NODE_8655_length_179_cov_1.819444_g8623_i0 PRJEB12296 8655 179 1.819444 3.25680476 Micromonospora sp. MH33 1945509 Bacteria Bacteria 47 3.76e-5   NR PSK67763.1 1945509 g8623 i0 47.6 2.64804469273743 42 22 70.4 0 2 127 3 44 PSK67763.1 Extracellular exo-alpha-L-arabinofuranosidase [Micromonospora sp. MH33] diamond 474 47 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. MH33

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;