RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJEB12296" and tax_kingdom = "Bacillati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Bacillati · 8 ✖

bioproject 1

  • PRJEB12296 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32959608 32959608 PRJEB12296_S_NODE_7634_length_185_cov_9.406667_g7602_i0 PRJEB12296 7634 185 9.406667 17.40233395 Clostridium mediterraneense 1805472 Bacteria Bacteria 41.2 0.0394   NR WP_066869877.1 1805472 g7602 i0 34.7 0.794594594594595 49 23 79.5 1 16 162 89 128 WP_066869877.1 DUF3794 domain-containing protein [Clostridium mediterraneense] diamond 147 41.2 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium mediterraneense
32976654 32976654 PRJEB12296_S_NODE_3955_length_230_cov_4.246154_g3923_i0 PRJEB12296 3955 230 4.246154 9.7661542 Mycobacterium asiaticum 1790 Bacteria Bacteria 65.1 1.39e-10   NR WP_172831408.1 1790 g3923 i0 55 2.34782608695652 60 27 78.3 0 229 50 13 72 WP_172831408.1 acetyltransferase [Mycobacterium asiaticum] diamond 540 65.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium asiaticum
32990901 32990901 PRJEB12296_S_NODE_8803_length_178_cov_57.125874_g8771_i0 PRJEB12296 8803 178 57.125874 101.68405572 Bacteria 2 Bacteria Bacteria 89.4 1.38e-19   NR WP_334666726.1 66883 g8771 i0 95.8 13.752808988764 48 2 80.9 0 146 3 186 233 WP_334666726.1 Hsp70 family protein, partial [Streptomyces cyaneofuscatus] diamond 2448 89.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cyaneofuscatus
33044783 33044783 PRJEB12296_S_NODE_8133_length_182_cov_1.585034_g8101_i0 PRJEB12296 8133 182 1.585034 2.88476188 [Ruminococcus] torques ATCC 27756 411460 Bacteria Bacteria 59.3 5.4e-9   NR EDK22938.1 411460 g8101 i0 65.3 0.807692307692308 49 11 75.8 2 9 146 120 165 EDK22938.1 hypothetical protein RUMTOR_02903 [[Ruminococcus] torques ATCC 27756] diamond 147 59.3 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter [Ruminococcus] torques
33061728 33061728 PRJEB12296_S_NODE_12661_length_164_cov_1.550388_g12629_i0 PRJEB12296 12661 164 1.550388 2.54263632 Paenibacillus wynnii 268407 Bacteria Bacteria 42.7 0.0128   NR WP_036654113.1 268407 g12629 i0 43.5 0.841463414634146 46 26 84.1 0 3 140 347 392 WP_036654113.1 MFS transporter [Paenibacillus wynnii] diamond 138 42.7 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus wynnii
33093129 33093129 PRJEB12296_S_NODE_12230_length_165_cov_5.584615_g12198_i0 PRJEB12296 12230 165 5.584615 9.21461475 Paenibacillus 44249 Bacteria Bacteria 55.5 3.69e-7   NR WP_268569832.1 1464 g12198 i0 65.8 1.38181818181818 38 13 69.1 0 125 12 201 238 WP_268569832.1 ATP-binding protein [Paenibacillus larvae] diamond 228 55.5 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus larvae
33110091 33110091 PRJEB12296_S_NODE_7134_length_189_cov_1.532468_g7102_i0 PRJEB12296 7134 189 1.532468 2.89636452 Bacteria 2 Bacteria Bacteria 75.9 3.16e-16   NR WP_239501243.1 1313 g7102 i0 100 5 45 0 71.4 0 53 187 1 45 WP_239501243.1 methyl-accepting chemotaxis protein, partial [Streptococcus pneumoniae] diamond 945 75.9 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae
33112968 33112968 PRJEB12296_S_NODE_8655_length_179_cov_1.819444_g8623_i0 PRJEB12296 8655 179 1.819444 3.25680476 Micromonospora sp. MH33 1945509 Bacteria Bacteria 47 3.76e-5   NR PSK67763.1 1945509 g8623 i0 47.6 2.64804469273743 42 22 70.4 0 2 127 3 44 PSK67763.1 Extracellular exo-alpha-L-arabinofuranosidase [Micromonospora sp. MH33] diamond 474 47 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. MH33

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;