RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJEB12237" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 9 ✖

tax_clade 1

bioproject 1

  • PRJEB12237 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12774284 12774284 PRJEB12237_P_NODE_2371_length_459_cov_1.622642_g2175_i0 PRJEB12237 2371 459 1.622642 7.44792678 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 163 9.62e-49   NR 1PRQ_A 5755 g2175 i0 67.2 1.63398692810458 125 41 81.7 0 433 59 1 125 1PRQ_A Chain A, PROFILIN IA [Acanthamoeba castellanii] diamond 750 163 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26937917 26937917 PRJEB12237_P_NODE_9822_length_171_cov_0.838235_g9626_i0 PRJEB12237 9822 171 0.838235 1.43338185 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 73.2 1.33e-13   NR XP_004338074.1 1257118 g9626 i0 79.6 2.57894736842105 49 10 86 0 169 23 182 230 XP_004338074.1 TolAlike protein [Acanthamoeba castellanii str. Neff] diamond 441 73.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27064574 27064574 PRJEB12237_P_NODE_8762_length_184_cov_1.073826_g8566_i0 PRJEB12237 8762 184 1.073826 1.97583984 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 55.5 5.33e-7   NR XP_004344664.1 1257118 g8566 i0 56.8 12.4891304347826 37 16 60.3 0 9 119 358 394 XP_004344664.1 ABC1 domain containing protein [Acanthamoeba castellanii str. Neff] diamond 2298 55.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28580609 28580609 PRJEB12237_P_NODE_8287_length_191_cov_1.012821_g8091_i0 PRJEB12237 8287 191 1.012821 1.93448811 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.9 1.26e-4   NR XP_004335242.1 1257118 g8091 i0 32.3 0.973821989528796 62 42 97.4 0 2 187 286 347 XP_004335242.1 serine/threonine kinase [Acanthamoeba castellanii str. Neff] diamond 186 48.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28643837 28643837 PRJEB12237_P_NODE_1307_length_634_cov_2.607679_g1141_i0 PRJEB12237 1307 634 2.607679 16.53268486 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 45.8 0.0229   NR XP_004334245.1 1257118 g1141 i0 32.1 0.738170347003155 156 83 65.8 9 592 176 4 153 XP_004334245.1 uncharacterized protein ACA1_031140 [Acanthamoeba castellanii str. Neff] diamond 468 45.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30159122 30159122 PRJEB12237_P_NODE_10812_length_161_cov_1.142857_g10616_i0 PRJEB12237 10812 161 1.142857 1.83999977 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 64.7 9.64e-11   NR XP_004335309.1 1257118 g10616 i0 50 0.968944099378882 52 26 96.9 0 3 158 39 90 XP_004335309.1 SCP2 sterol transfer family protein [Acanthamoeba castellanii str. Neff] diamond 156 64.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30222498 30222498 PRJEB12237_P_NODE_1372_length_616_cov_2.734940_g1203_i0 PRJEB12237 1372 616 2.73494 16.8472304 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.1 3e-17   NR XP_004349605.1 1257118 g1203 i0 37.1 0.642857142857143 132 75 60.9 4 544 170 4 134 XP_004349605.1 uncharacterized protein ACA1_142080 [Acanthamoeba castellanii str. Neff] diamond 396 85.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32656502 32656502 PRJEB12237_P_NODE_9320_length_177_cov_1.119718_g9124_i0 PRJEB12237 9320 177 1.119718 1.98190086 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87.8 4.73e-19   NR XP_004352467.1 1257118 g9124 i0 66 2.83050847457627 53 18 89.8 0 164 6 82 134 XP_004352467.1 zinc finger domain containing protein [Acanthamoeba castellanii str. Neff] diamond 501 87.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32681750 32681750 PRJEB12237_P_NODE_5720_length_247_cov_2.641509_g5524_i0 PRJEB12237 5720 247 2.641509 6.52452723 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 116 2.1199999999999996e-31   NR 7SOG_A 5755 g5524 i0 67.9 5.79352226720648 81 25 98.4 1 247 5 45 124 7SOG_A Chain A, Actophorin [Acanthamoeba castellanii] diamond 1431 116 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;