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contig_metadata

26 rows where analysis = "diamond", bioproject = "PRJEB12237" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 26 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12237 · 26 ✖

analysis 1

  • diamond · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18837398 18837398 PRJEB12237_P_NODE_3455_length_357_cov_2.723602_g3259_i0 PRJEB12237 3455 357 2.723602 9.72325914 Opisthokonta 33154 Chordata Chordata 84.7 5.23e-19   NR XP_025872417.1 9627 g3259 i0 63.8 6.89075630252101 58 21 48.7 0 18 191 11 68 XP_025872417.1 60S ribosomal protein L39-like, partial [Vulpes vulpes] diamond 2460 85.5 0.990643274853801 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Vulpes Vulpes vulpes
21697414 21697414 PRJEB12237_P_NODE_5918_length_242_cov_1.120773_g5722_i0 PRJEB12237 5918 242 1.120773 2.71227066 Metazoa 33208 Chordata Chordata 142 3.24e-37   NR NP_990699.2 9031 g5722 i0 81.3 18.8305785123967 80 15 99.2 0 3 242 687 766 NP_990699.2 elongation factor 2 [Gallus gallus] diamond 4557 142 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
22662543 22662543 PRJEB12237_P_NODE_4978_length_276_cov_2.278008_g4782_i0 PRJEB12237 4978 276 2.278008 6.28730208 Opisthokonta 33154 Chordata Chordata 82 2.35e-18   NR XP_065766518.1 9886 g4782 i0 68.5 32.5 54 17 58.7 0 255 94 15 68 XP_065766518.1 large ribosomal subunit protein eL39-like [Muntiacus reevesi] diamond 8970 82.8 0.990338164251208 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus reevesi
23937939 23937939 PRJEB12237_P_NODE_1759_length_542_cov_2.258383_g1576_i0 PRJEB12237 1759 542 2.258383 12.24043586 Metazoa 33208 Chordata Chordata 173 2.73e-50   NR MEE6458116.1 8439 g1576 i0 77 35.9114391143911 113 26 62.5 0 539 201 144 256 MEE6458116.1 hypothetical protein [Ascaphus truei] diamond 19464 174 0.994252873563218 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
26741397 26741397 PRJEB12237_P_NODE_11701_length_153_cov_2.025424_g11505_i0 PRJEB12237 11701 153 2.025424 3.09889872 Metazoa 33208 Chordata Chordata 90.9 4.7400000000000006e-21   NR NP_001279746.1 7868 g11505 i0 82.4 154 51 9 100 0 153 1 110 160 NP_001279746.1 ras-related protein Rab-1A [Callorhinchus milii] diamond 23562 90.9 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
27910906 27910906 PRJEB12237_P_NODE_10905_length_160_cov_1.280000_g10709_i0 PRJEB12237 10905 160 1.28 2.048 Opisthokonta 33154 Chordata Chordata 68.9 4.05e-13   NR XP_026366764.4 9644 g10709 i0 62.5 9.65625 48 18 90 0 16 159 68 115 XP_026366764.4 60S ribosomal protein L26-like 1 [Ursus arctos] diamond 1545 68.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ursus Ursus arctos
27942806 27942806 PRJEB12237_P_NODE_3065_length_389_cov_4.169492_g2869_i0 PRJEB12237 3065 389 4.169492 16.21932388 Metazoa 33208 Chordata Chordata 127 9.39e-34   NR CBY23026.1 34765 g2869 i0 62 50.6760925449871 100 38 77.1 0 2 301 112 211 CBY23026.1 unnamed protein product [Oikopleura dioica] diamond 19713 128 0.9921875 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
28075214 28075214 PRJEB12237_P_NODE_9865_length_170_cov_1.370370_g9669_i0 PRJEB12237 9865 170 1.37037 2.329629 Styela clava 7725 Chordata Chordata 79 2.38e-15   NR XP_039248684.1 7725 g9669 i0 58.9 2.94705882352941 56 21 95.3 1 166 5 376 431 XP_039248684.1 methylenetetrahydrofolate reductase-like [Styela clava] diamond 501 79 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
28100442 28100442 PRJEB12237_P_NODE_6885_length_217_cov_1.532967_g6689_i0 PRJEB12237 6885 217 1.532967 3.32653839 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62.8 7.49e-10   NR XP_002129681.1 7719 g6689 i0 50.7 16.63133640553 71 35 98.2 0 215 3 94 164 XP_002129681.1 40S ribosomal protein S8 [Ciona intestinalis] diamond 3609 63.2 0.993670886075949 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
28605792 28605792 PRJEB12237_P_NODE_1987_length_507_cov_3.360169_g1800_i0 PRJEB12237 1987 507 3.360169 17.03605683 Chordata 7711 Chordata Chordata 194 3.7299999999999997e-60   NR KAK9406484.1 8729 g1800 i0 67.1 59.0355029585799 146 44 84.6 2 481 53 38 182 KAK9406484.1 hypothetical protein NXF25_005258 [Crotalus adamanteus] diamond 29931 195 0.994871794871795 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
28826539 28826539 PRJEB12237_P_NODE_6128_length_236_cov_1.194030_g5932_i0 PRJEB12237 6128 236 1.19403 2.8179108 Testudines 8459 Chordata Chordata 58.2 1.22e-7   NR TFK16005.1 55544 g5932 i0 50 2.74576271186441 54 27 68.6 0 236 75 238 291 TFK16005.1 zinc finger CCCH domain-containing protein 14 [Platysternon megacephalum] diamond 648 58.2 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Platysternidae Platysternon Platysternon megacephalum
28896134 28896134 PRJEB12237_P_NODE_9808_length_171_cov_1.169118_g9612_i0 PRJEB12237 9808 171 1.169118 1.99919178 Protopterus annectens 7888 Chordata Chordata 53.1 3e-6   NR XP_043911632.1 7888 g9612 i0 50.9 1 57 27 100 1 1 171 205 260 XP_043911632.1 dual specificity protein phosphatase 5 [Protopterus annectens] diamond 171 53.1 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
28927791 28927791 PRJEB12237_P_NODE_10608_length_163_cov_0.890625_g10412_i0 PRJEB12237 10608 163 0.890625 1.45171875 Trachemys scripta elegans 31138 Chordata Chordata 75.9 1.58e-15   NR XP_034639018.1 31138 g10412 i0 73.9 13.8588957055215 46 12 84.7 0 147 10 21 66 XP_034639018.1 LOW QUALITY PROTEIN: nucleoside diphosphate kinase 3 [Trachemys scripta elegans] diamond 2259 75.9 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Emydidae Trachemys Trachemys scripta
29590543 29590543 PRJEB12237_P_NODE_9370_length_176_cov_1.418440_g9174_i0 PRJEB12237 9370 176 1.41844 2.4964544 Tachyglossus aculeatus 9261 Chordata Chordata 43.1 0.0113   NR XP_038610549.1 9261 g9174 i0 41.8 0.9375 55 28 86.9 2 168 16 518 572 XP_038610549.1 semaphorin-4C isoform X1 [Tachyglossus aculeatus] diamond 165 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Tachyglossidae Tachyglossus Tachyglossus aculeatus
29868781 29868781 PRJEB12237_P_NODE_9531_length_174_cov_1.230216_g9335_i0 PRJEB12237 9531 174 1.230216 2.14057584 Opisthokonta 33154 Chordata Chordata 105 8.08e-26   NR XP_066280419.1 7740 g9335 i0 93 74.4310344827586 57 4 98.3 0 4 174 125 181 XP_066280419.1 calmodulin isoform X2 [Branchiostoma lanceolatum] diamond 12951 106 0.990566037735849 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
29969768 29969768 PRJEB12237_P_NODE_12171_length_150_cov_1.373913_g11975_i0 PRJEB12237 12171 150 1.373913 2.0608695 Hyperolius riggenbachi 752182 Chordata Chordata 68.6 8e-12   NR XP_068133607.1 752182 g11975 i0 59.2 4.9 49 20 98 0 148 2 270 318 XP_068133607.1 WD repeat-containing protein 1 [Hyperolius riggenbachi] diamond 735 68.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
30222499 30222499 PRJEB12237_P_NODE_3092_length_387_cov_2.568182_g2896_i0 PRJEB12237 3092 387 2.568182 9.93886434 Petromyzon marinus 7757 Chordata Chordata 70.9 2.44e-11   NR XP_032815971.1 7757 g2896 i0 40 2.55813953488372 110 56 79.1 3 374 69 278 385 XP_032815971.1 indian hedgehog protein-like [Petromyzon marinus] diamond 990 70.9 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
30374686 30374686 PRJEB12237_P_NODE_9192_length_178_cov_1.678322_g8996_i0 PRJEB12237 9192 178 1.678322 2.98741316 Anura 8342 Chordata Chordata 63.2 9.75e-10   NR XP_040186749.1 8407 g8996 i0 50 4.82022471910112 58 28 96.1 1 177 7 92 149 XP_040186749.1 protein disulfide-isomerase isoform X2 [Rana temporaria] diamond 858 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
30753414 30753414 PRJEB12237_P_NODE_6274_length_232_cov_1.015228_g6078_i0 PRJEB12237 6274 232 1.015228 2.35532896 Mammalia 40674 Chordata Chordata 95.1 2.72e-21   NR XP_015992385.2 9407 g6078 i0 63.5 59.2758620689655 63 23 81.5 0 232 44 260 322 XP_015992385.2 40S ribosomal protein S4, X isoform isoform X1 [Rousettus aegyptiacus] diamond 13752 95.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
31391981 31391981 PRJEB12237_P_NODE_5336_length_261_cov_1.592920_g5140_i0 PRJEB12237 5336 261 1.59292 4.1575212 Gracilinanus agilis 191870 Chordata Chordata 103 1.05e-25   NR XP_044512975.1 191870 g5140 i0 55.8 24.5287356321839 86 38 98.9 0 259 2 64 149 XP_044512975.1 GTP:AMP phosphotransferase AK3, mitochondrial isoform X2 [Gracilinanus agilis] diamond 6402 103 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Didelphimorphia Didelphidae Gracilinanus Gracilinanus agilis
31701802 31701802 PRJEB12237_P_NODE_6357_length_229_cov_4.474227_g6161_i0 PRJEB12237 6357 229 4.474227 10.24597983 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 101 1.05e-25   NR XP_002128932.1 7719 g6161 i0 69.9 5.43668122270742 73 22 95.6 0 1 219 53 125 XP_002128932.1 60S ribosomal protein L31 [Ciona intestinalis] diamond 1245 101 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
32018122 32018122 PRJEB12237_P_NODE_11658_length_154_cov_1.067227_g11462_i0 PRJEB12237 11658 154 1.067227 1.64352958 Anura 8342 Chordata Chordata 67 3.02e-11   NR KAG9494486.1 57060 g11462 i0 56.9 30.7987012987013 51 22 99.4 0 1 153 144 194 KAG9494486.1 hypothetical protein GDO78_002024 [Eleutherodactylus coqui] diamond 4743 67.4 0.99406528189911 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Eleutherodactylidae Eleutherodactylus Eleutherodactylus coqui
32271412 32271412 PRJEB12237_P_NODE_5758_length_246_cov_2.606635_g5562_i0 PRJEB12237 5758 246 2.606635 6.4123221 Opisthokonta 33154 Chordata Chordata 45.8 8.58e-4   NR XP_040600932.1 10036 g5562 i0 50 2.59756097560976 32 16 39 0 5 100 69 100 XP_040600932.1 60S ribosomal protein L37-like [Mesocricetus auratus] diamond 639 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Mesocricetus Mesocricetus auratus
32404238 32404238 PRJEB12237_P_NODE_9699_length_172_cov_1.167883_g9503_i0 PRJEB12237 9699 172 1.167883 2.00875876 Branchiostoma lanceolatum 7740 Chordata Chordata 50.8 2.01e-5   NR XP_066300029.1 7740 g9503 i0 39.4 1.15116279069767 66 29 97.7 3 172 5 462 526 XP_066300029.1 tyrosinase-like [Branchiostoma lanceolatum] diamond 198 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
32530918 32530918 PRJEB12237_P_NODE_9779_length_171_cov_1.470588_g9583_i0 PRJEB12237 9779 171 1.470588 2.51470548 Jaculus jaculus 51337 Chordata Chordata 78.6 3.25e-15   NR XP_004650623.2 51337 g9583 i0 62.5 11.7719298245614 56 21 98.2 0 169 2 468 523 XP_004650623.2 thioredoxin reductase 1, cytoplasmic isoform X1 [Jaculus jaculus] diamond 2013 78.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Dipodidae Jaculus Jaculus jaculus
32776406 32776406 PRJEB12237_P_NODE_11940_length_152_cov_1.025641_g11744_i0 PRJEB12237 11940 152 1.025641 1.55897432 root 1 Root_unresolved Root_unresolved 43.9 0.00421   NR XP_069817389.1 150705 g11744 i0 48.8 6.27631578947368 41 21 80.9 0 29 151 307 347 XP_069817389.1 serine/threonine-protein kinase Chk2 isoform X5 [Dendropsophus ebraccatus] diamond 954 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Dendropsophus Dendropsophus ebraccatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;