RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJEB11748" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJEB11748 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8942386 8942386 PRJEB11748_P_NODE_177988_length_304_cov_2.045267_g175805_i0 PRJEB11748 177988 304 2.045267 6.21761168 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 138 4.6e-37   NR MFA7481575.1 3107663 g175805 i0 64.6 0.976973684210526 99 35 97.7 0 297 1 158 256 MFA7481575.1 3-dehydroquinate synthase [Vulcanimicrobiota bacterium] diamond 297 138 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
15316220 15316220 PRJEB11748_P_NODE_108653_length_400_cov_1.793510_g106479_i0 PRJEB11748 108653 400 1.79351 7.17404 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 177 1.9499999999999993e-52   NR MFA5507970.1 3107663 g106479 i0 83.3 0.81 108 18 81 0 27 350 17 124 MFA5507970.1 branched-chain-amino-acid transaminase [Vulcanimicrobiota bacterium] diamond 324 177 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
28232708 28232708 PRJEB11748_P_NODE_130246_length_362_cov_8.289037_g128069_i0 PRJEB11748 130246 362 8.289037 30.00631394 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 79.7 7.81e-17   NR MFA7481567.1 3107663 g128069 i0 59 0.505524861878453 61 25 50.6 0 158 340 2 62 MFA7481567.1 acyl carrier protein [Vulcanimicrobiota bacterium] diamond 183 79.7 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
30538280 30538280 PRJEB11748_P_NODE_165733_length_317_cov_1.675781_g163550_i0 PRJEB11748 165733 317 1.675781 5.31222577 Candidatus Elarobacter sp. 3047550 Bacteria Bacteria 123 1.13e-30   NR HZW53108.1 3047550 g163550 i0 68.8 0.8801261829653 93 28 88 1 20 298 71 162 HZW53108.1 alpha/beta hydrolase family protein [Candidatus Elarobacter sp.] diamond 279 123 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Elarobacter Candidatus Elarobacter sp.
30911485 30911485 PRJEB11748_P_NODE_32374_length_775_cov_91.824930_g30499_i0 PRJEB11748 32374 775 91.82493 711.6432075 Bacteria 2 Bacteria Bacteria 161 3.01e-45   NR HUC54547.1 2952917 g30499 i0 43.8 2.21806451612903 192 102 72.4 3 136 696 7 197 HUC54547.1 hypothetical protein [Candidatus Cybelea sp.] diamond 1719 162 0.993827160493827 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Cybelea Candidatus Cybelea sp.
32656367 32656367 PRJEB11748_P_NODE_263260_length_239_cov_1.803371_g261077_i0 PRJEB11748 263260 239 1.803371 4.31005669 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 141 9.2e-39   NR MFA5504458.1 3107663 g261077 i0 91.1 0.99163179916318 79 7 99.2 0 239 3 268 346 MFA5504458.1 type IV pilus twitching motility protein PilT [Vulcanimicrobiota bacterium] diamond 237 141 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;