RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB11748" and tax_phylum = "Candidatus Vogeliibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Vogeliibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB11748 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27159063 27159063 PRJEB11748_P_NODE_356742_length_194_cov_5.150376_g354559_i0 PRJEB11748 356742 194 5.150376 9.99172944 Candidatus Vogelbacteria bacterium 2053638 Bacteria Bacteria 59.7 6.83e-9   NR MCX6713480.1 2053638 g354559 i0 61.4 0.680412371134021 44 17 68 0 134 3 143 186 MCX6713480.1 nucleotide exchange factor GrpE [Candidatus Vogelbacteria bacterium] diamond 132 59.7 1 Bacteria Bacteria candidate phyla   Candidatus Vogeliibacteriota         Candidatus Vogelbacteria bacterium
29306575 29306575 PRJEB11748_P_NODE_381569_length_178_cov_7.931624_g379386_i0 PRJEB11748 381569 178 7.931624 14.11829072 Candidatus Vogelbacteria bacterium 2053638 Bacteria Bacteria 56.2 2.51e-7   NR MBI3632803.1 2053638 g379386 i0 65.2 0.775280898876405 46 16 77.5 0 40 177 1 46 MBI3632803.1 hypothetical protein [Candidatus Vogelbacteria bacterium] diamond 138 56.2 1 Bacteria Bacteria candidate phyla   Candidatus Vogeliibacteriota         Candidatus Vogelbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;