RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB11748" and tax_phylum = "Candidatus Shapironibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Shapironibacteriota · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB11748 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24242030 24242030 PRJEB11748_P_NODE_213320_length_272_cov_23.042654_g211137_i0 PRJEB11748 213320 272 23.042654 62.67601888 Candidatus Shapirobacteria bacterium CG_4_1 2053613 Bacteria Bacteria 134 4.339999999999999e-35   NR PIY65444.1 1974872 g211137 i0 82.9 0.904411764705882 82 14 90.4 0 254 9 144 225 PIY65444.1 MAG: F0F1 ATP synthase subunit beta [Candidatus Shapirobacteria bacterium CG_4_10_14_0_8_um_filter_39_15] diamond 246 134 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium CG_4_10_14_0_8_um_filter_39_15
26716010 26716010 PRJEB11748_P_NODE_71281_length_499_cov_40.931507_g69133_i0 PRJEB11748 71281 499 40.931507 204.24821993 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 159 2.12e-43   NR MCW1949212.1 2053613 g69133 i0 87.2 1.55110220440882 86 11 51.7 0 258 1 356 441 MCW1949212.1 ABC transporter substrate-binding protein [Candidatus Shapirobacteria bacterium] diamond 774 159 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium
30286153 30286153 PRJEB11748_P_NODE_379012_length_180_cov_6.848739_g376829_i0 PRJEB11748 379012 180 6.848739 12.3277302 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 45.4 0.00175   NR MBI2465411.1 2053613 g376829 i0 65.7 0.583333333333333 35 11 56.7 1 120 19 217 251 MBI2465411.1 30S ribosomal protein S2 [Candidatus Shapirobacteria bacterium] diamond 105 45.4 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium
31486864 31486864 PRJEB11748_P_NODE_387536_length_174_cov_4.469027_g385353_i0 PRJEB11748 387536 174 4.469027 7.77610698 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 53.1 2.2e-6   NR MEI8067899.1 2053613 g385353 i0 63.9 0.620689655172414 36 13 62.1 0 149 42 43 78 MEI8067899.1 hypothetical protein [Candidatus Shapirobacteria bacterium] diamond 108 53.1 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;