RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB11748" and tax_phylum = "Candidatus Liptoniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Liptoniibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB11748 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28991208 28991208 PRJEB11748_P_NODE_334288_length_204_cov_20.601399_g332105_i0 PRJEB11748 334288 204 20.601399 42.02685396 Candidatus Liptonbacteria bacterium RIFCSPLOWO2_ 2528273 Bacteria Bacteria 64.3 2.78e-11   NR OGY99589.1 1798650 g332105 i0 50.9 0.808823529411765 55 27 80.9 0 195 31 53 107 OGY99589.1 MAG: hypothetical protein A2945_03005 [Candidatus Liptonbacteria bacterium RIFCSPLOWO2_01_FULL_52_25] diamond 165 64.3 1 Bacteria Bacteria candidate phyla   Candidatus Liptoniibacteriota         Candidatus Liptonbacteria bacterium RIFCSPLOWO2_01_FULL_52_25
30064443 30064443 PRJEB11748_P_NODE_383312_length_177_cov_5.068966_g381129_i0 PRJEB11748 383312 177 5.068966 8.97206982 Candidatus Liptonbacteria bacterium 2528273 Bacteria Bacteria 50.1 4.11e-5   NR MBI2033587.1 2528273 g381129 i0 92.9 0.474576271186441 28 2 47.5 0 22 105 361 388 MBI2033587.1 sodium-translocating pyrophosphatase [Candidatus Liptonbacteria bacterium] diamond 84 50.1 1 Bacteria Bacteria candidate phyla   Candidatus Liptoniibacteriota         Candidatus Liptonbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;