RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJEB11748" and tax_phylum = "Candidatus Chisholmiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Chisholmiibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJEB11748 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6397049 6397049 PRJEB11748_P_NODE_372186_length_185_cov_23.983871_g370003_i0 PRJEB11748 372186 185 23.983871 44.37016135 Bacteria 2 Bacteria Bacteria 95.5 4.4900000000000005e-21   NR OGY17856.1 1797591 g370003 i0 73.7 2.77297297297297 57 15 92.4 0 173 3 288 344 OGY17856.1 MAG: DEAD/DEAH box helicase [Candidatus Chisholmbacteria bacterium RIFCSPHIGHO2_01_FULL_52_32] diamond 513 96.3 0.991692627206646 Bacteria Bacteria candidate phyla   Candidatus Chisholmiibacteriota         Candidatus Chisholmbacteria bacterium RIFCSPHIGHO2_01_FULL_52_32

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;