RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJEB11748" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 11 ✖

tax_clade 1

bioproject 1

  • PRJEB11748 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7670007 7670007 PRJEB11748_P_NODE_30547_length_803_cov_15.766846_g28706_i0 PRJEB11748 30547 803 15.766846 126.60777338 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 146 1.56e-39   NR CAB9510960.1 568900 g28706 i0 48.9 4.16189290161893 141 72 52.7 0 699 277 2 142 CAB9510960.1 Receptor expression-enhancing protein 5 [Seminavis robusta] diamond 3342 146 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
28353110 28353110 PRJEB11748_P_NODE_25186_length_899_cov_40.554893_g23511_i0 PRJEB11748 25186 899 40.554893 364.58848807 root 1 Root_unresolved Root_unresolved 110 2.32e-25   NR YP_010208168.1 37318 g23511 i0 35 6.51056729699666 163 103 53.4 2 415 894 1 163 YP_010208168.1 ribosomal protein L6 [Pseudo-nitzschia pungens] diamond 5853 111 0.990990990990991 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia pungens
29464130 29464130 PRJEB11748_P_NODE_73310_length_492_cov_9.535963_g71158_i0 PRJEB11748 73310 492 9.535963 46.91693796 Skeletonema marinoi 267567 SAR_Eukaryotes SAR_Eukaryotes 53.9 5.57e-5   NR KAK1735154.1 267567 g71158 i0 37.8 0.5 82 46 47 2 26 256 474 555 KAK1735154.1 hypothetical protein QTG54_014220 [Skeletonema marinoi] diamond 246 53.9 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema marinoi
30001363 30001363 PRJEB11748_P_NODE_156951_length_327_cov_2.304511_g154769_i0 PRJEB11748 156951 327 2.304511 7.53575097 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 64.7 1.95e-9   NR CAB9521483.1 568900 g154769 i0 57.4 0.495412844036697 54 21 49.5 1 1 162 393 444 CAB9521483.1 expressed unknown protein [Seminavis robusta] diamond 162 64.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
30033042 30033042 PRJEB11748_P_NODE_356631_length_194_cov_5.969925_g354448_i0 PRJEB11748 356631 194 5.969925 11.5816545 Pseudo-nitzschia multistriata 183589 SAR_Eukaryotes SAR_Eukaryotes 100 1.2399999999999999e-23   NR VEU43442.1 183589 g354448 i0 76.8 0.865979381443299 56 13 86.6 0 193 26 275 330 VEU43442.1 unnamed protein product [Pseudo-nitzschia multistriata] diamond 168 100 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
30538433 30538433 PRJEB11748_P_NODE_369993_length_187_cov_11.055556_g367810_i0 PRJEB11748 369993 187 11.055556 20.67388972 Skeletonema marinoi 267567 SAR_Eukaryotes SAR_Eukaryotes 56.2 3.14e-7   NR KAK1740316.1 267567 g367810 i0 59.5 0.593582887700535 37 15 59.4 0 56 166 107 143 KAK1740316.1 hypothetical protein QTG54_009266 [Skeletonema marinoi] diamond 111 56.2 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema marinoi
30854377 30854377 PRJEB11748_P_NODE_355394_length_195_cov_2.947761_g353211_i0 PRJEB11748 355394 195 2.947761 5.74813395 Bacillariaceae sp. 3061772 SAR_Eukaryotes SAR_Eukaryotes 52 9.3e-6   NR KAL3910417.1 3061772 g353211 i0 45.3 1.64615384615385 53 29 81.5 0 33 191 221 273 KAL3910417.1 MAG: hypothetical protein SGARI_002135, partial [Bacillariaceae sp.] diamond 321 52 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae   Bacillariaceae sp.
31486802 31486802 PRJEB11748_P_NODE_286736_length_226_cov_2.272727_g284553_i0 PRJEB11748 286736 226 2.272727 5.13636302 Nitzschia supralitorea 303403 SAR_Eukaryotes SAR_Eukaryotes 51.6 1.16e-6   NR YP_010133644.1 303403 g284553 i0 88 0.676991150442478 25 3 33.2 0 152 226 3 27 YP_010133644.1 hypothetical protein RF33 [Nitzschia supralitorea] diamond 153 51.6 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia supralitorea
31638413 31638413 PRJEB11748_P_NODE_66536_length_518_cov_14.794311_g64395_i0 PRJEB11748 66536 518 14.794311 76.63453098 root 1 Root_unresolved Root_unresolved 100 4.33e-22   NR CAB9531982.1 568900 g64395 i0 40.8 1.90540540540541 120 67 69.5 2 378 19 155 270 CAB9531982.1 Inherit from euNOG: Conserved hypothetical protein (Partial), partial [Seminavis robusta] diamond 987 101 0.99009900990099 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
31992782 31992782 PRJEB11748_P_NODE_69798_length_505_cov_17.421171_g67651_i0 PRJEB11748 69798 505 17.421171 87.97691355 Cyclostephanos tholiformis 382380 SAR_Eukaryotes SAR_Eukaryotes 60.5 2.85e-7   NR KAL3811007.1 382380 g67651 i0 44.7 0.504950495049505 85 38 50.5 2 417 163 262 337 KAL3811007.1 hypothetical protein ACHAXA_002284 [Cyclostephanos tholiformis] diamond 255 60.5 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclostephanos Cyclostephanos tholiformis
32246149 32246149 PRJEB11748_P_NODE_24958_length_904_cov_7.377224_g23294_i0 PRJEB11748 24958 904 7.377224 66.69010496 Skeletonema marinoi 267567 SAR_Eukaryotes SAR_Eukaryotes 50.4 0.00686   NR KAK1749184.1 267567 g23294 i0 32.6 0.315265486725664 95 55 28.5 2 397 140 384 478 KAK1749184.1 2OG-Fe(II) oxygenase family protein [Skeletonema marinoi] diamond 285 50.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema marinoi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;