RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB11523" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB11523 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28675079 28675079 PRJEB11523_P_NODE_2867_length_299_cov_51.976000_g2789_i0 PRJEB11523 2867 299 51.976 155.40824 Hyaloperonospora brassicae 162125 SAR_Eukaryotes SAR_Eukaryotes 80.5 3.27e-15   NR CAI5729246.1 162125 g2789 i0 97.6 0.421404682274247 42 1 42.1 0 13 138 382 423 CAI5729246.1 unnamed protein product [Hyaloperonospora brassicae] diamond 126 80.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
32246015 32246015 PRJEB11523_P_NODE_2238_length_358_cov_1.812298_g2160_i0 PRJEB11523 2238 358 1.812298 6.48802684 Peronospora destructor 86335 SAR_Eukaryotes SAR_Eukaryotes 229 2.05e-72   NR CAI5732052.1 86335 g2160 i0 98.3 0.963687150837989 115 2 96.4 0 12 356 191 305 CAI5732052.1 unnamed protein product [Peronospora destructor] diamond 345 229 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora destructor
32562383 32562383 PRJEB11523_P_NODE_2599_length_322_cov_1.611722_g2521_i0 PRJEB11523 2599 322 1.611722 5.18974484 Peronospora destructor 86335 SAR_Eukaryotes SAR_Eukaryotes 47 0.00141   NR CAI5728514.1 86335 g2521 i0 65.3 0.456521739130435 49 17 45.7 0 23 169 121 169 CAI5728514.1 unnamed protein product [Peronospora destructor] diamond 147 47 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora destructor
32845465 32845465 PRJEB11523_P_NODE_4620_length_219_cov_2.617647_g4542_i0 PRJEB11523 4620 219 2.617647 5.73264693 Peronospora destructor 86335 SAR_Eukaryotes SAR_Eukaryotes 55.5 8.74e-7   NR CAI5732052.1 86335 g4542 i0 61.8 0.753424657534247 55 8 57.5 1 1 126 309 363 CAI5732052.1 unnamed protein product [Peronospora destructor] diamond 165 55.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora destructor

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;