RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJEB11523" and tax_phylum = "Candidatus Giovannoniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Giovannoniibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJEB11523 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15315961 15315961 PRJEB11523_P_NODE_3033_length_288_cov_20.728033_g2955_i0 PRJEB11523 3033 288 20.728033 59.69673504 Bacteria 2 Bacteria Bacteria 79.3 8.81e-15   NR OGF69647.1 1798333 g2955 i0 50.6 1.61458333333333 81 31 75 2 68 283 481 561 OGF69647.1 MAG: hypothetical protein A3C73_04375 [Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_FULL_44_11] diamond 465 79.7 0.994981179422836 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_FULL_44_11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;