RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB11523" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJEB11523 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28548886 28548886 PRJEB11523_P_NODE_9087_length_153_cov_2.778846_g9009_i0 PRJEB11523 9087 153 2.778846 4.25163438 Bodo saltans 75058 Euglenozoa other_Eukaryota 42.4 0.0149   NR CUE73294.1 75058 g9009 i0 69.7 0.647058823529412 33 8 62.7 2 11 106 1938 1969 CUE73294.1 Hypothetical protein, putative [Bodo saltans] diamond 99 42.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
30222251 30222251 PRJEB11523_P_NODE_752_length_693_cov_50.442547_g686_i0 PRJEB11523 752 693 50.442547 349.56685071 Bodo saltans 75058 Euglenozoa other_Eukaryota 381 5.569999999999998e-119   NR CUG89890.1 75058 g686 i0 96.5 0.857142857142857 198 7 85.7 0 54 647 238 435 CUG89890.1 Hypothetical protein, putative [Bodo saltans] diamond 594 381 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
31233204 31233204 PRJEB11523_P_NODE_5335_length_202_cov_1.686275_g5257_i0 PRJEB11523 5335 202 1.686275 3.4062755 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 117 1.1000000000000002e-28   NR XP_002671758.1 5762 g5257 i0 91.8 0.905940594059406 61 5 90.6 0 12 194 986 1046 XP_002671758.1 uncharacterized protein NAEGRDRAFT_81445 [Naegleria gruberi] diamond 183 117 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;