RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB11523" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJEB11523 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24239632 24239632 PRJEB11523_P_NODE_2500_length_331_cov_3.503546_g2422_i0 PRJEB11523 2500 331 3.503546 11.59673726 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 115 5.500000000000001e-28   NR XP_004341325.1 1257118 g2422 i0 73.6 1.34138972809668 72 19 65.3 0 315 100 322 393 XP_004341325.1 ribosomal protein L3, putative [Acanthamoeba castellanii str. Neff] diamond 444 115 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27980380 27980380 PRJEB11523_P_NODE_905_length_631_cov_4.491409_g832_i0 PRJEB11523 905 631 4.491409 28.34079079 Paravannella minima 1443144 Discosea other_Eukaryota 75.9 4.69e-12   NR YP_009557775.1 1443144 g832 i0 43.6 1.64976228209192 117 56 52.3 2 50 379 244 357 YP_009557775.1 NADH dehydrogenase subunit 2 [Paravannella minima] diamond 1041 75.9 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
30127255 30127255 PRJEB11523_P_NODE_292_length_1111_cov_62.942561_g245_i0 PRJEB11523 292 1111 62.942561 699.29185271 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 237 1.44e-70   NR PRP87020.1 1890364 g245 i0 40.2 0.826282628262826 306 146 82.6 1 99 1016 146 414 PRP87020.1 SWI/SNF transcription activation complex subunit [Planoprotostelium fungivorum] diamond 918 237 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32593754 32593754 PRJEB11523_P_NODE_5360_length_201_cov_3.901316_g5282_i0 PRJEB11523 5360 201 3.901316 7.84164516 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 99 1.52e-22   NR XP_004367963.1 1257118 g5282 i0 92.9 0.835820895522388 56 4 83.6 0 23 190 348 403 XP_004367963.1 Protein P80, putative [Acanthamoeba castellanii str. Neff] diamond 168 99 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;