RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB10320" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB10320 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28763493 28763493 PRJEB10320_P_NODE_25667_length_161_cov_1.063492_g25409_i0 PRJEB10320 25667 161 1.063492 1.71222212 Bacteria 2 Bacteria Bacteria 53.1 2.59e-6   NR MBA3815253.1 2052176 g25409 i0 49 2.75776397515528 51 26 95 0 1 153 198 248 MBA3815253.1 polyribonucleotide nucleotidyltransferase [Parachlamydiaceae bacterium] diamond 444 53.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
31543669 31543669 PRJEB10320_P_NODE_18176_length_206_cov_1.403509_g17918_i0 PRJEB10320 18176 206 1.403509 2.89122854 Bacteria 2 Bacteria Bacteria 112 3.19e-28   NR MCH9608945.1 2047757 g17918 i0 76.5 10.8349514563107 68 16 99 0 3 206 117 184 MCH9608945.1 Transaldolase B [Chlamydiales bacterium] diamond 2232 113 0.991150442477876 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31644419 31644419 PRJEB10320_P_NODE_25677_length_161_cov_0.952381_g25419_i0 PRJEB10320 25677 161 0.952381 1.53333341 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 109 1.4500000000000002e-27   NR WP_032123858.1 389348 g25419 i0 92.5 0.987577639751553 53 4 98.8 0 1 159 173 225 WP_032123858.1 PEP/pyruvate-binding domain-containing protein [Candidatus Protochlamydia naegleriophila] diamond 159 109 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;