RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB10320" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB10320 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29369631 29369631 PRJEB10320_P_NODE_19709_length_195_cov_1.093750_g19451_i0 PRJEB10320 19709 195 1.09375 2.1328125 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 50.4 1.31e-5   NR MEC7183105.1 3034175 g19451 i0 44.2 0.8 52 29 80 0 158 3 44 95 MEC7183105.1 cyclic nucleotide-binding domain-containing protein [Bdellovibrionota bacterium] diamond 156 50.4 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29653387 29653387 PRJEB10320_P_NODE_26810_length_156_cov_1.652893_g26552_i0 PRJEB10320 26810 156 1.652893 2.57851308 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 58.5 1.71e-8   NR MBX9703510.1 2654442 g26552 i0 67.4 0.826923076923077 43 14 82.7 0 156 28 179 221 MBX9703510.1 hypothetical protein [Silvanigrellaceae bacterium] diamond 129 58.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
31802536 31802536 PRJEB10320_P_NODE_1157_length_953_cov_4.705882_g1024_i0 PRJEB10320 1157 953 4.705882 44.84705546 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 375 6.709999999999999e-129   NR MBX9767865.1 2053517 g1024 i0 90.5 0.632738719832109 201 19 63.3 0 263 865 1 201 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 603 375 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;