RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB10320" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJEB10320 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22965405 22965405 PRJEB10320_P_NODE_21679_length_182_cov_1.258503_g21421_i0 PRJEB10320 21679 182 1.258503 2.29047546 FCB group 1783270 Bacteria Bacteria 102 5.789999999999999e-24   NR WP_009165642.1 638849 g21421 i0 76.7 26.6868131868132 60 14 98.9 0 182 3 326 385 WP_009165642.1 elongation factor Tu [Pyramidobacter piscolens] diamond 4857 103 0.990291262135922 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter piscolens
27538377 27538377 PRJEB10320_P_NODE_16664_length_219_cov_1.625000_g16406_i0 PRJEB10320 16664 219 1.625 3.55875 Deinococcus sp. 47478 Bacteria Bacteria 89.7 2.01e-20   NR MDO4264703.1 47478 g16406 i0 58.7 2.05479452054795 75 28 98.6 2 2 217 9 83 MDO4264703.1 NAD(P)H-dependent oxidoreductase [Deinococcus sp.] diamond 450 89.7 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
31986302 31986302 PRJEB10320_P_NODE_7398_length_376_cov_1.290323_g7142_i0 PRJEB10320 7398 376 1.290323 4.85161448 Bacteria 2 Bacteria Bacteria 47.4 0.00404   NR WP_305081318.1 515440 g7142 i0 30.9 1.4281914893617 94 59 75 2 375 94 669 756 WP_305081318.1 tetratricopeptide repeat protein [Oceanotoga teriensis] diamond 537 47.4 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Oceanotoga Oceanotoga teriensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;