RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB10140" and tax_phylum = "Candidatus Staskawicziibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Staskawicziibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB10140 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28580171 28580171 PRJEB10140_P_NODE_165447_length_228_cov_0.837989_g148138_i0 PRJEB10140 165447 228 0.837989 1.91061492 Candidatus Staskawiczbacteria bacterium 2053617 Bacteria Bacteria 48.9 2.02e-4   NR MBM3206904.1 2053617 g148138 i0 42.9 0.644736842105263 49 28 64.5 0 205 59 619 667 MBM3206904.1 reverse transcriptase family protein [Candidatus Staskawiczbacteria bacterium] diamond 147 48.9 1 Bacteria Bacteria candidate phyla   Candidatus Staskawicziibacteriota         Candidatus Staskawiczbacteria bacterium
29843069 29843069 PRJEB10140_P_NODE_208391_length_189_cov_3.628571_g191082_i0 PRJEB10140 208391 189 3.628571 6.85799919 Candidatus Staskawiczbacteria bacterium RIFOXYB1_FULL_37_44 1802223 Bacteria Bacteria 42 0.0342   NR OGZ78301.1 1802223 g191082 i0 37.8 0.714285714285714 45 28 71.4 0 157 23 304 348 OGZ78301.1 MAG: hypothetical protein A2358_00860 [Candidatus Staskawiczbacteria bacterium RIFOXYB1_FULL_37_44] diamond 135 42 1 Bacteria Bacteria candidate phyla   Candidatus Staskawicziibacteriota         Candidatus Staskawiczbacteria bacterium RIFOXYB1_FULL_37_44

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;