RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB10140" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJEB10140 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27569794 27569794 PRJEB10140_P_NODE_66064_length_556_cov_1.473373_g49071_i0 PRJEB10140 66064 556 1.473373 8.19195388 Fusobacterium gastrosuis 1755100 Bacteria Bacteria 48.1 0.00943   NR WP_367102557.1 1755100 g49071 i0 34.4 0.517985611510791 96 53 46.4 3 280 537 137 232 WP_367102557.1 DEAD/DEAH box helicase [Fusobacterium gastrosuis] diamond 288 48.1 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gastrosuis
30058040 30058040 PRJEB10140_P_NODE_282551_length_163_cov_0.912281_g265242_i0 PRJEB10140 282551 163 0.912281 1.48701803 Leptotrichia 32067 Bacteria Bacteria 86.3 5.86e-18   NR WP_147004088.1 157687 g265242 i0 77.8 3.01840490797546 54 12 99.4 0 163 2 1168 1221 WP_147004088.1 autotransporter-associated N-terminal domain-containing protein [Leptotrichia wadei] diamond 492 86.3 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
30626767 30626767 PRJEB10140_P_NODE_195473_length_199_cov_1.040000_g178164_i0 PRJEB10140 195473 199 1.04 2.0696 FCB group 1783270 Bacteria Bacteria 98.2 3.6e-25   NR MBP6408970.1 2053555 g178164 i0 100 1.47738693467337 49 0 73.9 0 148 2 1 49 MBP6408970.1 helix-turn-helix transcriptional regulator [Fusobacteriaceae bacterium] diamond 294 98.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium
31106733 31106733 PRJEB10140_P_NODE_235035_length_174_cov_1.520000_g217726_i0 PRJEB10140 235035 174 1.52 2.6448 Streptobacillus moniliformis 34105 Bacteria Bacteria 43.9 0.00553   NR WP_064614332.1 34105 g217726 i0 67.9 0.482758620689655 28 9 48.3 0 173 90 2 29 WP_064614332.1 DUF4116 domain-containing protein [Streptobacillus moniliformis] diamond 84 43.9 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus moniliformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;