RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJDB9741" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 32 ✖

tax_clade 1

bioproject 1

  • PRJDB9741 · 32 ✖

analysis 1

  • diamond · 32 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1285240 1285240 PRJDB9741_P_NODE_2882_length_417_cov_2.858696_g2567_i0 PRJDB9741 2882 417 2.858696 11.92076232 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 182 3.16e-56   NR RHY06028.1 112090 g2567 i0 71.9 0.870503597122302 121 34 87.1 0 398 36 19 139 RHY06028.1 hypothetical protein DYB25_001794 [Aphanomyces astaci] diamond 363 182 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
2560675 2560675 PRJDB9741_P_NODE_1383_length_695_cov_1.761610_g1101_i0 PRJDB9741 1383 695 1.76161 12.2431895 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 167 2.9299999999999996e-48   NR DBA01302.1 4803 g1101 i0 57.4 7.94244604316547 141 55 58.7 1 53 460 42 182 DBA01302.1 TPA: hypothetical protein N0F65_001807 [Lagenidium giganteum] diamond 5520 168 0.994047619047619 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
11488852 11488852 PRJDB9741_P_NODE_2370_length_480_cov_2.220418_g2056_i0 PRJDB9741 2370 480 2.220418 10.6580064 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 169 1.96e-50   NR DBA01302.1 4803 g2056 i0 59.3 6.26875 145 54 88.1 2 38 460 39 182 DBA01302.1 TPA: hypothetical protein N0F65_001807 [Lagenidium giganteum] diamond 3009 169 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
16587808 16587808 PRJDB9741_P_NODE_28034_length_167_cov_0.864407_g27717_i0 PRJDB9741 28034 167 0.864407 1.44355969 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 58.9 2.59e-8   NR TYZ57587.1 1485010 g27717 i0 64.4 2.51497005988024 45 16 80.8 0 1 135 1343 1387 TYZ57587.1 hypothetical protein PybrP1_013208 [[Pythium] brassicae (nom. inval.)] diamond 420 58.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
21687670 21687670 PRJDB9741_P_NODE_7198_length_234_cov_1.102703_g6881_i0 PRJDB9741 7198 234 1.102703 2.58032502 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 94.7 1.07e-22   NR XP_067795061.1 4785 g6881 i0 69.7 21.8333333333333 66 16 79.5 1 3 188 82 147 XP_067795061.1 Archaeal ribosomal protein S17P [Phytophthora cinnamomi] diamond 5109 94.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
27095661 27095661 PRJDB9741_P_NODE_10482_length_204_cov_0.987097_g10165_i0 PRJDB9741 10482 204 0.987097 2.01367788 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 107 2.45e-27   NR RHY88214.1 112090 g10165 i0 70.1 0.985294117647059 67 20 98.5 0 1 201 33 99 RHY88214.1 hypothetical protein DYB35_009251 [Aphanomyces astaci] diamond 201 107 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
27126918 27126918 PRJDB9741_P_NODE_32382_length_165_cov_0.879310_g32065_i0 PRJDB9741 32382 165 0.87931 1.4508615 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 52.4 5.1e-6   NR KAF1326322.1 82926 g32065 i0 43.4 1.87272727272727 53 30 96.4 0 163 5 2655 2707 KAF1326322.1 Nuclear protein export factor, partial [Globisporangium splendens] diamond 309 52.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
27443703 27443703 PRJDB9741_P_NODE_23823_length_172_cov_1.308943_g23506_i0 PRJDB9741 23823 172 1.308943 2.25138196 Peronospora effusa 542832 SAR_Eukaryotes SAR_Eukaryotes 50.8 1.45e-5   NR RMX63629.1 542832 g23506 i0 57.8 0.784883720930233 45 19 78.5 0 168 34 69 113 RMX63629.1 hypothetical protein DD238_007702 [Peronospora effusa] diamond 135 50.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora effusa
27500709 27500709 PRJDB9741_P_NODE_21123_length_176_cov_1.543307_g20806_i0 PRJDB9741 21123 176 1.543307 2.71622032 Globisporangium 1448052 SAR_Eukaryotes SAR_Eukaryotes 73.9 1.02e-13   NR KAF1323601.1 82926 g20806 i0 68.4 1.94318181818182 57 18 97.2 0 176 6 121 177 KAF1323601.1 60s ribosomal protein l4, partial [Globisporangium splendens] diamond 342 73.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
27563418 27563418 PRJDB9741_P_NODE_15684_length_185_cov_2.073529_g15367_i0 PRJDB9741 15684 185 2.073529 3.83602865 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 91.3 6.25e-22   NR TMW58359.1 41045 g15367 i0 71.2 7.65405405405405 59 17 95.7 0 1 177 60 118 TMW58359.1 hypothetical protein Poli38472_009918 [Pythium oligandrum] diamond 1416 91.7 0.995637949836423 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
27690377 27690377 PRJDB9741_P_NODE_27744_length_167_cov_0.864407_g27427_i0 PRJDB9741 27744 167 0.864407 1.44355969 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0133   NR OQS05603.1 74557 g27427 i0 52.6 4.79640718562874 38 18 68.3 0 6 119 45 82 OQS05603.1 hypothetical protein THRCLA_02289, partial [Thraustotheca clavata] diamond 801 43.1 0.990719257540603 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
27722012 27722012 PRJDB9741_P_NODE_2524_length_461_cov_1.507282_g2210_i0 PRJDB9741 2524 461 1.507282 6.94857002 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 115 1.57e-26   NR TMW60811.1 41045 g2210 i0 46.4 4.45119305856833 125 61 77.4 2 89 445 366 490 TMW60811.1 hypothetical protein Poli38472_000853 [Pythium oligandrum] diamond 2052 115 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
27759419 27759419 PRJDB9741_P_NODE_21144_length_176_cov_1.480315_g20827_i0 PRJDB9741 21144 176 1.480315 2.6053544 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 60.8 5.92e-9   NR OQR91827.1 1202772 g20827 i0 56.4 0.664772727272727 39 17 66.5 0 146 30 340 378 OQR91827.1 serine incorporator-like [Achlya hypogyna] diamond 117 60.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
27822458 27822458 PRJDB9741_P_NODE_28584_length_167_cov_0.864407_g28267_i0 PRJDB9741 28584 167 0.864407 1.44355969 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 99.4 4.339999999999999e-24   NR TMW67787.1 41045 g28267 i0 80 3.95209580838323 55 11 98.8 0 167 3 118 172 TMW67787.1 hypothetical protein Poli38472_007459 [Pythium oligandrum] diamond 660 99.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
28826428 28826428 PRJDB9741_P_NODE_27468_length_167_cov_1.254237_g27151_i0 PRJDB9741 27468 167 1.254237 2.09457579 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 61.2 3.93e-9   NR TMW57157.1 41045 g27151 i0 58.5 5.73053892215569 53 22 95.2 0 163 5 235 287 TMW57157.1 hypothetical protein Poli38472_003082 [Pythium oligandrum] diamond 957 61.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
29180125 29180125 PRJDB9741_P_NODE_12489_length_192_cov_1.888112_g12172_i0 PRJDB9741 12489 192 1.888112 3.62517504 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 53.5 3e-6   NR DAZ98879.1 4803 g12172 i0 53.5 0.671875 43 20 67.2 0 129 1 1 43 DAZ98879.1 TPA: hypothetical protein N0F65_002604 [Lagenidium giganteum] diamond 129 53.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
29300278 29300278 PRJDB9741_P_NODE_28349_length_167_cov_0.864407_g28032_i0 PRJDB9741 28349 167 0.864407 1.44355969 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 68.2 1.42e-11   NR TYZ60727.1 1485010 g28032 i0 65.1 4.22155688622755 43 15 77.2 0 32 160 534 576 TYZ60727.1 hypothetical protein PybrP1_008050 [[Pythium] brassicae (nom. inval.)] diamond 705 68.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
29400918 29400918 PRJDB9741_P_NODE_27749_length_167_cov_0.864407_g27432_i0 PRJDB9741 27749 167 0.864407 1.44355969 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 68.2 1.42e-11   NR KAG9406019.1 112091 g27432 i0 66 8.62275449101796 53 18 95.2 0 164 6 375 427 KAG9406019.1 hypothetical protein AC1031_003940 [Aphanomyces cochlioides] diamond 1440 68.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
30343067 30343067 PRJDB9741_P_NODE_5732_length_263_cov_0.948598_g5416_i0 PRJDB9741 5732 263 0.948598 2.49481274 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 144 1.84e-38   NR KAI9993151.1 4787 g5416 i0 80.5 6.9467680608365 87 17 99.2 0 3 263 167 253 KAI9993151.1 hypothetical protein PInf_015221 [Phytophthora infestans] diamond 1827 145 0.993103448275862 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
30406120 30406120 PRJDB9741_P_NODE_3153_length_389_cov_2.005882_g2838_i0 PRJDB9741 3153 389 2.005882 7.80288098 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 165 1.12e-48   NR DBA01623.1 4803 g2838 i0 63.3 7.92030848329049 128 46 97.9 1 382 2 73 200 DBA01623.1 TPA: hypothetical protein N0F65_011379, partial [Lagenidium giganteum] diamond 3081 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
30406121 30406121 PRJDB9741_P_NODE_35593_length_163_cov_0.894737_g35276_i0 PRJDB9741 35593 163 0.894737 1.45842131 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.00487   NR KAK1928820.1 4793 g35276 i0 36 12.0736196319018 50 32 92 0 9 158 2477 2526 KAK1928820.1 ABC transporter G family member 36 [Phytophthora citrophthora] diamond 1968 43.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora citrophthora
30658480 30658480 PRJDB9741_P_NODE_15753_length_185_cov_1.772059_g15436_i0 PRJDB9741 15753 185 1.772059 3.27830915 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 85.1 3.13e-19   NR KAE8911393.1 53985 g15436 i0 60 8.80540540540541 60 24 97.3 0 6 185 7 66 KAE8911393.1 hypothetical protein PF003_g4481 [Phytophthora fragariae] diamond 1629 85.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
31264846 31264846 PRJDB9741_P_NODE_40655_length_161_cov_0.910714_g40338_i0 PRJDB9741 40655 161 0.910714 1.46624954 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 62.4 1.42e-9   NR OQR84663.1 1202772 g40338 i0 54.8 0.782608695652174 42 19 78.3 0 20 145 345 386 OQR84663.1 hypothetical protein ACHHYP_13054 [Achlya hypogyna] diamond 126 62.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
31290362 31290362 PRJDB9741_P_NODE_40095_length_161_cov_0.910714_g39778_i0 PRJDB9741 40095 161 0.910714 1.46624954 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 68.9 7e-12   NR KAK1931977.1 4793 g39778 i0 70.8 8.27329192546584 48 14 89.4 0 144 1 1211 1258 KAK1931977.1 Pre-mRNA-splicing factor SYF1 [Phytophthora citrophthora] diamond 1332 69.3 0.994227994227994 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora citrophthora
31328020 31328020 PRJDB9741_P_NODE_22096_length_174_cov_2.112000_g21779_i0 PRJDB9741 22096 174 2.112 3.67488 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 72.8 3.65e-13   NR KAJ0401890.1 114742 g21779 i0 68.8 7.43103448275862 48 15 82.8 0 30 173 1 48 KAJ0401890.1 hypothetical protein ATCC90586_009012 [Pythium insidiosum] diamond 1293 72.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
31549741 31549741 PRJDB9741_P_NODE_29096_length_166_cov_1.717949_g28779_i0 PRJDB9741 29096 166 1.717949 2.85179534 Peronospora belbahrii 622444 SAR_Eukaryotes SAR_Eukaryotes 97.1 5.1799999999999987e-23   NR CAH0518377.1 622444 g28779 i0 79.6 1.91566265060241 54 11 97.6 0 3 164 171 224 CAH0518377.1 unnamed protein product [Peronospora belbahrii] diamond 318 97.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora belbahrii
31638304 31638304 PRJDB9741_P_NODE_7436_length_230_cov_1.850829_g7119_i0 PRJDB9741 7436 230 1.850829 4.2569067 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 81.3 7.83e-16   NR KAF4132869.1 4787 g7119 i0 49.3 17.4130434782609 73 33 92.6 2 219 7 235 305 KAF4132869.1 Glycosyl hydrolases family 6 [Phytophthora infestans] diamond 4005 81.6 0.996323529411765 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
32113035 32113035 PRJDB9741_P_NODE_25158_length_170_cov_1.446281_g24841_i0 PRJDB9741 25158 170 1.446281 2.4586777 root 1 Root_unresolved Root_unresolved 72.4 4.8e-13   NR OQS04142.1 74557 g24841 i0 59.6 2.04705882352941 57 22 98.8 1 169 2 791 847 OQS04142.1 hypothetical protein THRCLA_03600, partial [Thraustotheca clavata] diamond 348 72.8 0.994505494505495 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
32467223 32467223 PRJDB9741_P_NODE_10379_length_204_cov_3.064516_g10062_i0 PRJDB9741 10379 204 3.064516 6.25161264 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 90.1 2.06e-20   NR KAF0727549.1 100861 g10062 i0 67.6 1.97058823529412 68 22 100 0 204 1 24 91 KAF0727549.1 hypothetical protein Ae201684_014377 [Aphanomyces euteiches] diamond 402 90.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
32656008 32656008 PRJDB9741_P_NODE_22540_length_174_cov_1.272000_g22223_i0 PRJDB9741 22540 174 1.272 2.21328 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 55.1 6.36e-7   NR CCA20512.1 890382 g22223 i0 62.2 3.10344827586207 37 14 63.8 0 6 116 243 279 CCA20512.1 calreticulin precursor putative [Albugo laibachii Nc14] diamond 540 55.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
32656012 32656012 PRJDB9741_P_NODE_31800_length_165_cov_0.879310_g31483_i0 PRJDB9741 31800 165 0.87931 1.4508615 Nothophytophthora sp. Chile5 2483409 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.00104   NR RLN52460.1 2483409 g31483 i0 45 4.32727272727273 40 22 72.7 0 143 24 326 365 RLN52460.1 hypothetical protein BBJ28_00007669 [Nothophytophthora sp. Chile5] diamond 714 45.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Nothophytophthora Nothophytophthora sp. Chile5
32750840 32750840 PRJDB9741_P_NODE_8140_length_221_cov_0.889535_g7823_i0 PRJDB9741 8140 221 0.889535 1.96587235 Phytophthora boehmeriae 109152 SAR_Eukaryotes SAR_Eukaryotes 64.7 5.11e-10   NR KAG7397394.1 109152 g7823 i0 45.2 1.98190045248869 73 40 99.1 0 2 220 884 956 KAG7397394.1 Cation transporting ATPase, C-terminus [Phytophthora boehmeriae] diamond 438 64.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;