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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJDB9741" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB9741 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26614862 26614862 PRJDB9741_P_NODE_39221_length_161_cov_1.642857_g38904_i0 PRJDB9741 39221 161 1.642857 2.64499977 Opisthokonta 33154 Nematoda Nematoda 94 1.09e-20   NR KAI3422602.1 36090 g38904 i0 76.9 74.6273291925466 52 12 96.9 0 160 5 285 336 KAI3422602.1 ATP-binding cassette sub- E member 1 [Globodera pallida] diamond 12015 94 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera pallida
27064096 27064096 PRJDB9741_P_NODE_2182_length_508_cov_0.991285_g1870_i0 PRJDB9741 2182 508 0.991285 5.0357278 Meloidogyne graminicola 189291 Nematoda Nematoda 54.3 3.51e-5   NR AVZ46778.1 189291 g1870 i0 40.7 0.478346456692913 81 48 47.8 0 244 2 117 197 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 243 54.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
27221950 27221950 PRJDB9741_P_NODE_32243_length_165_cov_0.879310_g31926_i0 PRJDB9741 32243 165 0.87931 1.4508615 Diploscapter pachys 2018661 Nematoda Nematoda 94 7.85e-22   NR PAV77790.1 2018661 g31926 i0 88.9 0.981818181818182 54 6 98.2 0 2 163 176 229 PAV77790.1 hypothetical protein WR25_10987 [Diploscapter pachys] diamond 162 94 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
27412042 27412042 PRJDB9741_P_NODE_1023_length_854_cov_2.592547_g786_i0 PRJDB9741 1023 854 2.592547 22.14035138 Meloidogyne graminicola 189291 Nematoda Nematoda 114 7.480000000000001e-26   NR AVZ46778.1 189291 g786 i0 51.5 0.470725995316159 134 62 46.7 2 616 218 117 248 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 402 114 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
28295768 28295768 PRJDB9741_P_NODE_30426_length_166_cov_0.871795_g30109_i0 PRJDB9741 30426 166 0.871795 1.4471797 Prionchulus punctatus 293874 Nematoda Nematoda 61.2 1.02e-9   NR ADK34019.1 293874 g30109 i0 65 2.80120481927711 40 14 72.3 0 166 47 115 154 ADK34019.1 ubiquitin-Like family 1 [Prionchulus punctatus] diamond 465 61.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Mononchida Mononchidae Prionchulus Prionchulus punctatus
28321412 28321412 PRJDB9741_P_NODE_36386_length_163_cov_0.894737_g36069_i0 PRJDB9741 36386 163 0.894737 1.45842131 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 81.6 2.21e-16   NR TMS38419.1 34508 g36069 i0 67.9 23.4110429447853 53 17 97.5 0 161 3 66 118 TMS38419.1 hypothetical protein L596_005149 [Steinernema carpocapsae] diamond 3816 81.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
28921221 28921221 PRJDB9741_P_NODE_18188_length_181_cov_1.537879_g17871_i0 PRJDB9741 18188 181 1.537879 2.78356099 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.9 1.06e-4   NR GMR59931.1 1317129 g17871 i0 43.2 2.1878453038674 44 25 72.9 0 29 160 275 318 GMR59931.1 hypothetical protein PMAYCL1PPCAC_30126, partial [Pristionchus mayeri] diamond 396 49.3 0.991886409736308 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus mayeri
29022442 29022442 PRJDB9741_P_NODE_10848_length_200_cov_2.192053_g10531_i0 PRJDB9741 10848 200 2.192053 4.384106 Diploscapter pachys 2018661 Nematoda Nematoda 52.8 1.46e-6   NR PAV88325.1 2018661 g10531 i0 42.4 4.5 66 38 99 0 200 3 68 133 PAV88325.1 hypothetical protein WR25_07571 [Diploscapter pachys] diamond 900 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
29243144 29243144 PRJDB9741_P_NODE_37409_length_162_cov_1.353982_g37092_i0 PRJDB9741 37409 162 1.353982 2.19345084 Angiostrongylus cantonensis 6313 Nematoda Nematoda 73.6 1.11e-13   NR KAE9415342.1 6313 g37092 i0 58.5 1.96296296296296 53 20 98.1 1 161 3 159 209 KAE9415342.1 hypothetical protein Angca_010209, partial [Angiostrongylus cantonensis] diamond 318 73.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis
29363531 29363531 PRJDB9741_P_NODE_18969_length_180_cov_1.167939_g18652_i0 PRJDB9741 18969 180 1.167939 2.1022902 Caenorhabditis 6237 Nematoda Nematoda 69.3 6.62e-12   NR CAI5445746.1 860376 g18652 i0 73.3 10.2333333333333 45 12 75 0 136 2 544 588 CAI5445746.1 unnamed protein product [Caenorhabditis angaria] diamond 1842 69.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
30121206 30121206 PRJDB9741_P_NODE_5092_length_282_cov_1.304721_g4776_i0 PRJDB9741 5092 282 1.304721 3.67931322 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 172 8.29e-51   NR NP_001256250.1 6239 g4776 i0 80.6 143.436170212766 93 18 98.9 0 3 281 182 274 NP_001256250.1 Serine/threonine-protein phosphatase PP1-alpha [Caenorhabditis elegans] diamond 40449 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
30790805 30790805 PRJDB9741_P_NODE_24574_length_171_cov_1.262295_g24257_i0 PRJDB9741 24574 171 1.262295 2.15852445 Caenorhabditis elegans 6239 Nematoda Nematoda 67 9.13e-12   NR NP_001379064.1 6239 g24257 i0 81.8 0.771929824561403 44 8 77.2 0 169 38 159 202 NP_001379064.1 Large ribosomal subunit protein uL13 [Caenorhabditis elegans] diamond 132 67 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
31669985 31669985 PRJDB9741_P_NODE_17157_length_183_cov_1.231343_g16840_i0 PRJDB9741 17157 183 1.231343 2.25335769 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 111 1.97e-30   NR CDW60316.1 36087 g16840 i0 83.1 18.5901639344262 59 10 96.7 0 3 179 10 68 CDW60316.1 Ribosomal protein L37 [Trichuris trichiura] diamond 3402 112 0.991071428571429 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
31764891 31764891 PRJDB9741_P_NODE_897_length_917_cov_2.013825_g682_i0 PRJDB9741 897 917 2.013825 18.46677525 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 248 3.06e-77   NR CAD5210754.1 465554 g682 i0 54.9 1.4721919302072 226 101 73.9 1 916 239 55 279 CAD5210754.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 1350 250 0.992 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;