RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJDB9741" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB9741 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28132169 28132169 PRJDB9741_P_NODE_25185_length_170_cov_1.421488_g24868_i0 PRJDB9741 25185 170 1.421488 2.4165296 Pseudomonadati 3379134 Bacteria Bacteria 86.7 3.56e-18   NR HEU4699496.1 2448054 g24868 i0 67.9 7.58823529411765 56 18 98.8 0 2 169 368 423 HEU4699496.1 acetyl-CoA hydrolase/transferase C-terminal domain-containing protein [Gemmatimonadales bacterium] diamond 1290 86.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31201134 31201134 PRJDB9741_P_NODE_20395_length_177_cov_1.593750_g20078_i0 PRJDB9741 20395 177 1.59375 2.8209375 Longimicrobiales bacterium 2910168 Bacteria Bacteria 72 7.12e-13   NR HUF75775.1 2910168 g20078 i0 63.8 0.983050847457627 58 21 98.3 0 175 2 245 302 HUF75775.1 adenylate/guanylate cyclase domain-containing protein [Longimicrobiales bacterium] diamond 174 72 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
31675880 31675880 PRJDB9741_P_NODE_23097_length_173_cov_1.370968_g22780_i0 PRJDB9741 23097 173 1.370968 2.37177464 Longimicrobiales bacterium 2910168 Bacteria Bacteria 98.6 8.82e-24   NR HUP89793.1 2910168 g22780 i0 85.5 0.953757225433526 55 8 95.4 0 1 165 27 81 HUP89793.1 succinate dehydrogenase cytochrome b subunit [Longimicrobiales bacterium] diamond 165 98.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
31865566 31865566 PRJDB9741_P_NODE_26177_length_168_cov_2.277311_g25860_i0 PRJDB9741 26177 168 2.277311 3.82588248 Gemmatirosa sp. 2510638 Bacteria Bacteria 65.1 2.32e-11   NR HZF67424.1 2510638 g25860 i0 82.1 0.696428571428571 39 7 69.6 0 117 1 1 39 HZF67424.1 hypothetical protein [Gemmatirosa sp.] diamond 117 65.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;