RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJDB9741" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 5 ✖

tax_clade 1

bioproject 1

  • PRJDB9741 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28043293 28043293 PRJDB9741_P_NODE_36225_length_163_cov_0.894737_g35908_i0 PRJDB9741 36225 163 0.894737 1.45842131 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 66.2 6.49e-11   NR MBP7760746.1 2026720 g35908 i0 55.6 0.993865030674847 54 24 99.4 0 2 163 24 77 MBP7760746.1 DEAD/DEAH box helicase family protein [Candidatus Saccharibacteria bacterium] diamond 162 66.2 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
30664430 30664430 PRJDB9741_P_NODE_43413_length_151_cov_2.500000_g43096_i0 PRJDB9741 43413 151 2.5 3.775 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 99 8.19e-25   NR MBB1567657.1 2026720 g43096 i0 95.9 0.973509933774834 49 2 97.4 0 149 3 97 145 MBB1567657.1 septum formation initiator family protein [Candidatus Saccharibacteria bacterium] diamond 147 99 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
32435630 32435630 PRJDB9741_P_NODE_25319_length_170_cov_1.239669_g25002_i0 PRJDB9741 25319 170 1.239669 2.1074373 Candidatus Saccharimonas sp. 1917697 Bacteria Bacteria 112 1.46e-27   NR RKW01118.1 1917697 g25002 i0 96.4 0.970588235294118 55 2 97.1 0 5 169 309 363 RKW01118.1 MAG: hypothetical protein D8B38_04740 [Candidatus Saccharimonas sp.] diamond 165 112 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
32556228 32556228 PRJDB9741_P_NODE_9659_length_210_cov_2.472050_g9342_i0 PRJDB9741 9659 210 2.47205 5.191305 Candidatus Saccharimonas 1331051 Bacteria Bacteria 64.3 4.79e-10   NR RKW04463.1 1917697 g9342 i0 96.9 1.47142857142857 32 1 45.7 0 208 113 2 33 RKW04463.1 MAG: pyridine nucleotide-disulfide oxidoreductase, partial [Candidatus Saccharimonas sp.] diamond 309 64.7 0.993817619783617 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
32902186 32902186 PRJDB9741_P_NODE_34200_length_164_cov_0.886957_g33883_i0 PRJDB9741 34200 164 0.886957 1.45460948 Candidatus Saccharimonadaceae 2171986 Bacteria Bacteria 104 1.11e-24   NR HPQ82428.1 1917697 g33883 i0 94.4 1.97560975609756 54 3 98.8 0 164 3 181 234 HPQ82428.1 HAD-IC family P-type ATPase [Candidatus Saccharimonas sp.] diamond 324 104 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;