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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJDB4941" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB4941 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29205746 29205746 PRJDB4941_P_NODE_18149_length_243_cov_1.072165_g17381_i0 PRJDB4941 18149 243 1.072165 2.60536095 PVC group 1783257 Bacteria Bacteria 112 1.0400000000000002e-27   NR OGX05949.1 1801840 g17381 i0 65.8 4.90123456790123 79 27 97.5 0 237 1 136 214 OGX05949.1 MAG: hypothetical protein A2Z88_02640 [Omnitrophica WOR_2 bacterium GWA2_47_8] diamond 1191 112 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica WOR_2 bacterium GWA2_47_8
29647176 29647176 PRJDB4941_P_NODE_30730_length_179_cov_1.600000_g29962_i0 PRJDB4941 30730 179 1.6 2.864 Bacteria 2 Bacteria Bacteria 106 6.6699999999999995e-25   NR OGX13865.1 1801835 g29962 i0 92.7 9.21787709497207 55 4 92.2 0 15 179 252 306 OGX13865.1 MAG: glycogen phosphorylase, partial [Omnitrophica bacterium RIFOXYB12_FULL_50_7] diamond 1650 107 0.990654205607477 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica bacterium RIFOXYB12_FULL_50_7
30632640 30632640 PRJDB4941_P_NODE_22073_length_216_cov_1.245509_g21305_i0 PRJDB4941 22073 216 1.245509 2.69029944 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 97.1 3.94e-22   NR MCL5097306.1 2035772 g21305 i0 70.8 2 72 21 100 0 1 216 224 295 MCL5097306.1 ribokinase [Candidatus Omnitrophota bacterium] diamond 432 97.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30790786 30790786 PRJDB4941_P_NODE_35214_length_168_cov_0.873950_g34446_i0 PRJDB4941 35214 168 0.87395 1.468236 Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_ 2035772 Bacteria Bacteria 55.1 5.58e-7   NR OGX28975.1 1801853 g34446 i0 48.1 0.928571428571429 52 27 92.9 0 157 2 211 262 OGX28975.1 MAG: hypothetical protein A2705_00630, partial [Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_01_FULL_52_10] diamond 156 55.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_01_FULL_52_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;