RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJDB4941" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJDB4941 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1284790 1284790 PRJDB4941_P_NODE_36182_length_167_cov_0.881356_g35414_i0 PRJDB4941 36182 167 0.881356 1.47186452 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 105 3.48e-25   NR PRP88288.1 1890364 g35414 i0 83.3 0.970059880239521 54 9 97 0 165 4 178 231 PRP88288.1 hypothetical protein PROFUN_03397 [Planoprotostelium fungivorum] diamond 162 105 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30089651 30089651 PRJDB4941_P_NODE_23612_length_208_cov_0.981132_g22844_i0 PRJDB4941 23612 208 0.981132 2.04075456 Dictyosteliales 2058949 Evosea other_Eukaryota 75.1 9.25e-14   NR XP_003284699.1 5786 g22844 i0 54.4 1.94711538461538 68 30 96.6 1 207 7 289 356 XP_003284699.1 uncharacterized protein DICPUDRAFT_148495 [Dictyostelium purpureum] diamond 405 75.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
31486429 31486429 PRJDB4941_P_NODE_33316_length_171_cov_1.278689_g32548_i0 PRJDB4941 33316 171 1.278689 2.18655819 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 75.5 4.05e-14   NR PRP81173.1 1890364 g32548 i0 63.2 2 57 21 100 0 171 1 54 110 PRP81173.1 beta-1,3(4)-glucanase LIC1 [Planoprotostelium fungivorum] diamond 342 75.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31707572 31707572 PRJDB4941_P_NODE_36217_length_167_cov_0.881356_g35449_i0 PRJDB4941 36217 167 0.881356 1.47186452 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 103 6.83e-24   NR PRP74781.1 1890364 g35449 i0 100 0.988023952095808 55 0 98.8 0 166 2 1054 1108 PRP74781.1 hypothetical protein PROFUN_06642 [Planoprotostelium fungivorum] diamond 165 103 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;