RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJDB4470" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJDB4470 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31802275 31802275 PRJDB4470_P_NODE_39817_length_345_cov_1.756757_g38665_i0 PRJDB4470 39817 345 1.756757 6.06081165 Spirochaetales bacterium 2026792 Bacteria Bacteria 44.3 0.0278   NR MBQ2294799.1 2026792 g38665 i0 32.9 2.21739130434783 85 45 73.9 3 313 59 66 138 MBQ2294799.1 DUF115 domain-containing protein [Spirochaetales bacterium] diamond 765 44.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium
31897388 31897388 PRJDB4470_P_NODE_55817_length_265_cov_1.842593_g54662_i0 PRJDB4470 55817 265 1.842593 4.88287145 Spirochaetota bacterium 2202144 Bacteria Bacteria 65.1 6.13e-10   NR MBN2435506.1 2202144 g54662 i0 56.4 0.622641509433962 55 24 62.3 0 198 34 3 57 MBN2435506.1 hypothetical protein [Spirochaetota bacterium] diamond 165 65.1 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;