RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJDB4470" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJDB4470 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16586258 16586258 PRJDB4470_P_NODE_29574_length_424_cov_1.333333_g28433_i0 PRJDB4470 29574 424 1.333333 5.65333192 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 103 8.27e-24   NR KAJ8578052.1 4785 g28433 i0 52 0.870283018867924 123 39 87 3 422 54 159 261 KAJ8578052.1 hypothetical protein ON010_g1153 [Phytophthora cinnamomi] diamond 369 103 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
32176439 32176439 PRJDB4470_P_NODE_34958_length_378_cov_4.714286_g33806_i0 PRJDB4470 34958 378 4.714286 17.82000108 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 76.3 5.22e-14   NR OQR92236.1 1202772 g33806 i0 64.3 6.11904761904762 56 20 44.4 0 86 253 171 226 OQR92236.1 pre-mRNA-splicing factor syf2 [Achlya hypogyna] diamond 2313 77 0.990909090909091 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;