RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJDB4470" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 5 ✖

tax_clade 1

bioproject 1

  • PRJDB4470 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27285349 27285349 PRJDB4470_P_NODE_97923_length_172_cov_1.292683_g96768_i0 PRJDB4470 97923 172 1.292683 2.22341476 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 104 9.31e-26   NR MDB5159905.1 2026720 g96768 i0 94.7 1.98837209302326 57 3 99.4 0 1 171 8 64 MDB5159905.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 342 104 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
28390501 28390501 PRJDB4470_P_NODE_62426_length_242_cov_1.373057_g61271_i0 PRJDB4470 62426 242 1.373057 3.32279794 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 44.3 0.00997   NR HUY25280.1 2973664 g61271 i0 57.6 0.409090909090909 33 14 40.9 0 41 139 271 303 HUY25280.1 IS3 family transposase [Candidatus Saccharimonadales bacterium] diamond 99 44.3 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
28611576 28611576 PRJDB4470_P_NODE_100007_length_169_cov_2.341667_g98852_i0 PRJDB4470 100007 169 2.341667 3.95741723 Candidatus Saccharimonadaceae bacterium 2830836 Bacteria Bacteria 53.9 1.53e-6   NR HJM04591.1 2830836 g98852 i0 68.8 0.568047337278107 32 10 56.8 0 168 73 321 352 HJM04591.1 type IV pilus assembly protein PilM [Candidatus Saccharimonadaceae bacterium] diamond 96 53.9 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae   Candidatus Saccharimonadaceae bacterium
28737861 28737861 PRJDB4470_P_NODE_111247_length_165_cov_0.896552_g110092_i0 PRJDB4470 111247 165 0.896552 1.4793108 Candidatus Mycosynbacter amalyticus 2665156 Bacteria Bacteria 114 5.47e-31   NR WP_260762453.1 2665156 g110092 i0 90.7 0.981818181818182 54 5 98.2 0 164 3 77 130 WP_260762453.1 hypothetical protein [Candidatus Mycosynbacter amalyticus] diamond 162 114 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Mycosynbacter Candidatus Mycosynbacter amalyticus
31163697 31163697 PRJDB4470_P_NODE_90675_length_182_cov_1.157895_g89520_i0 PRJDB4470 90675 182 1.157895 2.1073689 root 1 Root_unresolved Root_unresolved 53.1 3.5e-6   NR MBR3236515.1 2026720 g89520 i0 47.9 4.3021978021978 48 25 79.1 0 1 144 662 709 MBR3236515.1 DEAD/DEAH box helicase [Candidatus Saccharibacteria bacterium] diamond 783 53.1 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;