RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJDB4470" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJDB4470 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27095610 27095610 PRJDB4470_P_NODE_103502_length_167_cov_1.728814_g102347_i0 PRJDB4470 103502 167 1.728814 2.88711938 Streptobacillus canis 2678686 Bacteria Bacteria 88.6 3.29e-19   NR WP_156299180.1 2678686 g102347 i0 74.5 5.92814371257485 55 14 98.8 0 167 3 232 286 WP_156299180.1 alpha/beta hydrolase fold domain-containing protein [Streptobacillus canis] diamond 990 88.6 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus canis
29969247 29969247 PRJDB4470_P_NODE_110871_length_165_cov_0.896552_g109716_i0 PRJDB4470 110871 165 0.896552 1.4793108 Streptobacillus moniliformis 34105 Bacteria Bacteria 103 2e-27   NR WP_196760930.1 34105 g109716 i0 100 0.981818181818182 54 0 98.2 0 164 3 16 69 WP_196760930.1 hypothetical protein, partial [Streptobacillus moniliformis] diamond 162 103 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus moniliformis
31549672 31549672 PRJDB4470_P_NODE_115556_length_164_cov_0.886957_g114401_i0 PRJDB4470 115556 164 0.886957 1.45460948 Fusobacteriales bacterium 2044942 Bacteria Bacteria 72.4 2.99e-13   NR MDR2878618.1 2044942 g114401 i0 57.4 0.98780487804878 54 23 98.8 0 163 2 205 258 MDR2878618.1 Flp pilus assembly complex ATPase component TadA [Fusobacteriales bacterium] diamond 162 72.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales     Fusobacteriales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;