RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJDB4470" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJDB4470 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27885320 27885320 PRJDB4470_P_NODE_72865_length_214_cov_1.163636_g71710_i0 PRJDB4470 72865 214 1.163636 2.49018104 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 83.2 2.09e-18   NR XP_004333881.1 1257118 g71710 i0 49.3 1.02336448598131 73 35 99.5 2 214 2 42 114 XP_004333881.1 Hypothetical protein ACA1_273800 [Acanthamoeba castellanii str. Neff] diamond 219 83.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28580082 28580082 PRJDB4470_P_NODE_57587_length_258_cov_3.014354_g56432_i0 PRJDB4470 57587 258 3.014354 7.77703332 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 42 0.0377   NR KAH3764260.1 1580589 g56432 i0 34.9 0.732558139534884 63 41 73.3 0 69 257 43 105 KAH3764260.1 hypothetical protein Pelo_3878 [Pelomyxa schiedti] diamond 189 42 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29022403 29022403 PRJDB4470_P_NODE_97748_length_172_cov_1.658537_g96593_i0 PRJDB4470 97748 172 1.658537 2.85268364 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 113 2.29e-27   NR PRP84059.1 1890364 g96593 i0 89.5 0.994186046511628 57 6 99.4 0 1 171 771 827 PRP84059.1 hypothetical protein PROFUN_08521 [Planoprotostelium fungivorum] diamond 171 113 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29678817 29678817 PRJDB4470_P_NODE_56090_length_264_cov_1.767442_g54935_i0 PRJDB4470 56090 264 1.767442 4.66604688 Eumycetozoa 142796 Evosea other_Eukaryota 147 8.959999999999997e-43   NR P34729.1 5791 g54935 i0 80.2 2.93181818181818 86 17 97.7 0 3 260 81 166 P34729.1 RecName: Full=Ras-like protein 1; Flags: Precursor [Physarum polycephalum] diamond 774 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
31327958 31327958 PRJDB4470_P_NODE_119016_length_163_cov_0.912281_g117861_i0 PRJDB4470 119016 163 0.912281 1.48701803 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 51.2 1.3e-5   NR PRP85379.1 1890364 g117861 i0 58.3 0.662576687116564 36 15 66.3 0 2 109 679 714 PRP85379.1 acyl-coenzyme A thioesterase 9, mitochondrial-like [Planoprotostelium fungivorum] diamond 108 51.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31549689 31549689 PRJDB4470_P_NODE_5996_length_974_cov_3.250811_g5333_i0 PRJDB4470 5996 974 3.250811 31.66289914 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 126 3.9899999999999997e-28   NR XP_004353575.1 1257118 g5333 i0 40.1 0.54517453798768 177 86 53.6 2 551 30 354 513 XP_004353575.1 S1 RNA binding domain containing protein [Acanthamoeba castellanii str. Neff] diamond 531 126 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32624695 32624695 PRJDB4470_P_NODE_29560_length_424_cov_1.741333_g28419_i0 PRJDB4470 29560 424 1.741333 7.38325192 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 50.1 7.43e-4   NR XP_636931.1 352472 g28419 i0 52.2 0.325471698113208 46 22 32.5 0 141 4 776 821 XP_636931.1 hypothetical protein DDB_G0288001 [Dictyostelium discoideum AX4] diamond 138 50.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;