RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJDB3785" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJDB3785 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7660975 7660975 PRJDB3785_S_NODE_1027_length_792_cov_3.931359_g930_i0 PRJDB3785 1027 792 3.931359 31.13636328 Mesotoga sp. 2053577 Bacteria Bacteria 397 5.11e-133   NR MCB1222954.1 2053577 g930 i0 76.6 5.72727272727273 252 59 95.5 0 7 762 104 355 MCB1222954.1 molecular chaperone DnaK [Mesotoga sp.] diamond 4536 397 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga sp.
27721984 27721984 PRJDB3785_S_NODE_10584_length_233_cov_1.108696_g10431_i0 PRJDB3785 10584 233 1.108696 2.58326168 FCB group 1783270 Bacteria Bacteria 124 1.4599999999999999e-31   NR WP_126350791.1 32062 g10431 i0 70.1 63.3991416309013 77 23 99.1 0 1 231 14 90 WP_126350791.1 ornithine--oxo-acid transaminase [Deinococcus radiophilus] diamond 14772 125 0.992 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiophilus
27853700 27853700 PRJDB3785_S_NODE_15405_length_198_cov_2.053691_g15252_i0 PRJDB3785 15405 198 2.053691 4.06630818 Synergistaceae bacterium 2053624 Bacteria Bacteria 62.4 2.48e-9   NR MBR0248167.1 2053624 g15252 i0 40.9 3 66 35 100 1 198 1 652 713 MBR0248167.1 putative Ig domain-containing protein [Synergistaceae bacterium] diamond 594 62.4 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;